Cucurbita pepo subsp. pepo (vegetable marrow): 111800795
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Entry
111800795 CDS
T05351
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111800795
03420 Nucleotide excision repair
111800795
03430 Mismatch repair
111800795
03440 Homologous recombination
111800795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpep03000
]
111800795
03032 DNA replication proteins [BR:
cpep03032
]
111800795
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111800795
Transcription factors [BR:
cpep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111800795
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111800795
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111800795
MMR (mismatch excision repair)
111800795
DSBR (double strand breaks repair)
HR (homologous recombination)
111800795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
CDC24_OB3
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
111800795
NCBI-ProteinID:
XP_023540415
LinkDB
All DBs
Position
LG08:complement(7098383..7103042)
Genome browser
AA seq
853 aa
AA seq
DB search
MAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQG
MLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATR
SVTGAFSGNPQSSVVTSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTA
SIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDNPRPPLNAYACPQPTYQQPP
SMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDL
LDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTST
IQPCFEDDQSIPQQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRT
LQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKSGRVSDFNGKAVGTISSS
QLSVEPDFPEARTLREWFEKEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKP
DWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYI
LQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMK
LKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLG
LRGAGNIGGGQFVSPSRNISNVSSREYGTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSC
GGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAA
VPPAYGNSGFTAR
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtttaagctgacggaaggagcagtgatgatgatatgcaaaagggaatcgact
gcagagacgttccagccggttgtgcaagtaattgacttgaaattggttaacactgcgcaa
caatcgggtagtgagaggtacagattgttgctttctgatggaacacattaccagcaagga
atgttggggactcagctgaatggattggtgaagtccgggaagttgcagaaaggttccata
gttcaactgaagcaatatgtttgtaatcccgttcaagaacgcctgattataattgtcatc
gagttggacgtggtagtggaaatgtgcgaatttattggcgaacctgtaccagcaacgaga
tcggtaacaggtgcatttagtggaaacccccaatcctctgtggtgacttcacccagtagt
ggaatagctggtaaaatgaatgtatctagtgcatcttctgaactgcctaaagtgaatcaa
tcacatgcatcgcatgtgggagcttattcaaacactccggaatctggaagatacactgca
tcaattgcgcctcctctttaccctaataagacagatcctggaacaaggtttaacgggtca
tcttctttaagtgggtcatatggtgatcagaaaatggcatatcacaacaatggatcagat
aatccaaggccacctctaaatgcttatgcttgtcctcagccaacatatcagcagccacct
tcaatgtacagcaacagagggccagtagcaaaaaacgaagctcccccaaggatcatgcct
attactgctctgaacccttaccaaggaaggtggacaataaaggctcgagttacttcaaaa
ggagaacttagacactacaataatcctcgtggagatgggaaagtgttttcatttgatcta
cttgatgcacaccgtggagaaatacgagttacgtgtttcaacatggtagctgaccagttt
tacaaccagattgaaccaggtaaagtttacttcatttctaaaggaagcttgaaacctgct
caaaagaacttcaaccatctcaaaaatgactttgaaatatttcttgagagcacatcaaca
atccaaccttgctttgaggatgaccaatcaatcccccaacagcagttccatttccatcag
attagtgagattgaaggcatggacaacaacagtgttgtagatttaattggtgttgttacg
tccattaatccttcaacttctataatgagaaaaaatggtatcgagactcagaagagaacc
cttcagttgaaagatatgtctgggcgaagtgttgaattgactctttggggaaacttttgt
caagcagaagggcaacgattgcaaaatatgtgcgactcagggatgttcccagtcttggct
gtgaaatctggtagggtgagtgacttcaatgggaaggcagtgggaaccatttcatcaagt
cagctgtctgtagagccagattttcctgaggctcgtactctgagagagtggtttgagaag
gaagggaggagtactccgtctgtgtctatatcgagggaagtttctagcataggcaggaca
gatgtccgtaagaccatatctcaaataaaagatgagaggttaggaacatctgagaagcct
gattggattactgttagtgcaaccgtttcatttattaaggtagacaacttctgttacaca
gcatgtcctatcatgatcggggaccgacaatgcagcaaaaaggttacaaataatggagat
ggaaagtggagatgtgaccggtgtgatcagtctgttgacgaatgtgattacagatacata
ctccagctgcaaatacaggatcatactggtttaacttgggtaactgcatttcaagaaggt
ggtgaggaaatcatgggcgtacctgcaaaaagattgtattatttgaaatacgaagagcaa
gatgatgagaaatttgcagaaatcatccgtaaggttctttttacaaaatttatcatgaag
ctgaaaataaaggaagagacttttagtgatgaacagagagtaaggtcaacagtggtgaaa
gcagaaagcattaatttttcgactgagtcccgatttcttctagacttaatggaaaagctc
agggcagagaacgccagttctgttaccccaaagacagaaagcaccattcatgatctcgga
cttcgtggtgccgggaatattggtggtggacagttcgtgtcacccagtcgaaatattagc
aatgttagcagcagagaatatggtacaccaaacctaggtgttcagtatgagaaccaatac
agcagttctaggccttctccatccatggtgcataattcacacacttactgcaacagctgc
gggggctctggtcacagctcgatgaactgcccaagtataacaagtgctcctacgcatccc
attggagggggaatgtattcaaatcgatcttctggcccttccggtggtggtgtctctggg
gaatgctttaaatgccatcaaacagggcattgggccagggattgccctggtttggctgct
gtccctccagcttatggtaacagtggcttcacggctaggtaa
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