Cucurbita pepo subsp. pepo (vegetable marrow): 111800847
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Entry
111800847 CDS
T05351
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111800847
09122 Translation
03013 Nucleocytoplasmic transport
111800847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111800847
03041 Spliceosome [BR:
cpep03041
]
111800847
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111800847
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111800847
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111800847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
eIF2A
Coatomer_WDAD
Nup160
PROPPIN
Motif
Other DBs
NCBI-GeneID:
111800847
NCBI-ProteinID:
XP_023540495
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All DBs
Position
LG08:6711550..6715344
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AA seq
314 aa
AA seq
DB search
MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG
THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
ADEGIFRIFGFESA
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatcgacgccggcttttaagaatctttacagcagagagtatcaaggtcacaag
aagaaggtacattctgtggcatggaattgcactggtatgaagcttgcttccggttctgtc
gatcaaactgctcgagtttggcatattgagcctcatggacatggtaaggttaaggatgtc
gagttgaaagggcatactgatagtgtagatcagctatgttgggatcctaaacattctgat
cttatagcaaccgcctctggtgacaagactgttcgactatgggatgctcgtaatgggaaa
tgctcacagcaagctgagctgagtggggagaatataaacatcacctacaagcctgatggg
acgcacatagctgttgggaatagggatgatgaactcactatactggatgttaggaagttt
aagccagttcacaagcgcaagttcaattacgaggtgaacgaaattgcttggaacatgact
ggggaaatgtttttcctgacaactggaaatggtaccgttgaagtactagcatacccgtca
cttcgacctattgaaactcttatggctcacacagctggttgttactgcatcgcaattgac
ccggttggagggtattttgcagttggaagtgctgattcattagttagcctatgggatatc
tctcagatgctctgcgtgcgaacatttacaaaactcgaatggcctgtccgaactataagt
ttcaaccacacaggagaatacattgcttctgctagtgaggacttgttcattgatatatcg
agtgttcaatcgggacgaacggttcatcagattccttgtcgggctgctatgaatagtgtg
gagtggaatccaaagcacaatttgcttgcatatgctggggatgacaagaataagtaccag
gctgatgaaggtatttttaggatctttgggtttgaaagtgcatga
DBGET
integrated database retrieval system
