KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111800901
Entry
111800901         CDS       T05351                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082  ATP-dependent chromatin remodeling
cpep03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111800901
   03083 Polycomb repressive complex
    111800901
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cpep03036]
    111800901
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     111800901
  Histone modification proteins
   HAT complexes
    HATB complex
     111800901
   HDAC complexes
    Sin3A-HDAC complex
     111800901
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     111800901
    PRC2.2
     111800901
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     111800901
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111800901
  Chromatin remodeling factors
   NuRD complex
    111800901
   NuRF complex
    111800901
   NuRF complex (fruit fly)
    111800901
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I WD40_RFWD3 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_RIG_1st WD_LRWD1 eIF2A MIOS_WD40 NBCH_WD40 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Phage_CRI
Other DBs
NCBI-GeneID: 111800901
NCBI-ProteinID: XP_023540574
LinkDB
Position
LG08:complement(2865581..2868605)
AA seq 423 aa
MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDSENDARHYDDDRADAGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPSKPPLDGTCNPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKTLEAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPTVNKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISSALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPEEPP
KAS
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggggaaggatgatgaggagatgcgtggagaaatggaggagaggttgataaacgaggag
tacaagatttggaagaagaatactccgtttctttacgatttggtcatcactcatgcccta
gagtggccttcacttactgtcgagtggttgccggaccgggaggagcctccggggaaggat
tactccgttcagaagatgattttggggactcatacctccgagaatgagccgaattacctc
atgctcgctcaggttcagcttccgcttgaggattctgagaacgatgcgcgacattacgat
gacgaccgtgctgatgcgggtggctttggatgtgcgaacggaaaggtacaaataatccag
caaataaatcacgatggtgaagtcaatagagcacgttatatgcctcaaaatccatttatt
attgccacaaagactgtcagcgcggaagtctttgttttcgactatagtaaacacccatcc
aaaccacctcttgatggtacgtgtaatcccgacttgaggttgaggggtcacaatactgaa
ggttatggtttatcgtggagcaagttcaagcagggccatttacttagcggctctgatgat
gcacagatttgtttatgggacattaatgctactccgaagaacaaaacccttgaagctatg
caaatttttaaggttcatgaaggtgttgtggaagatgtcgcatggcatctgaggcatgaa
tacttatttggttcagtaggcgacgaccaatacctactaatatgggatcttcgaactcct
actgtcaataagcctgtacagtccgtagttgctcatcaaagtgaggtcaattgcttggca
ttcaatccctttaatgagtgggtagtagccacagggtcaactgataagacggttaagttg
ttcgatctacgtaagatcagctctgcactccatacatttgactgtcacaaggaggaggtt
ttccaggttggctggaatccaaagaatgaaacaatcttagcttcttgttgtcttggtaga
agactcatggtttgggaccttagcaggattgatgaggagcagacgcccgaggatgcggaa
gatggcccaccggagttgctgttcattcacggcggtcataccagtaaaatatcagacttc
tcttggaatccctgtgaggactgggtggttgctagtgtagctgaagataacatactccaa
atctggcagatggctgagaacatctaccatgatgaagatgatttgccagaggaacctcca
aaggcctcttag

DBGET integrated database retrieval system