Cucurbita pepo subsp. pepo (vegetable marrow): 111801027
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Entry
111801027 CDS
T05351
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111801027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111801027
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111801027
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111801027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
111801027
NCBI-ProteinID:
XP_023540753
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All DBs
Position
LG08:147816..165753
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AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNLVSELESQIDNFEAEMEGLSVKKGKSRPPRLIHLETSITRHKA
HIMKLELILRLLDNDELSHEDVNDVREFLEDYVERNQEDFDEFSDVDDLYSSLPLDKVES
LEDLGTICPPSLVKGTTALSLKTTLATTGTQVPVTVAPNHQPNTVTQDQVDDSTLPDGNT
DTLLKTPPPKNSVLGSSAATTPTGNHAASTSLNGAVHGSGLSATSAILPGSSSVRAVEAT
GAPNSSPVNMPTSAKDEEISSFPGRKLSPSFADTGLVRGGMGRGVTANQPASSSTHTSGI
VVPSTITLGNVSSASEVTKRNILGSEERAGNSGLVQSMVSPLSNRMVLPTAAKPSDGTSS
VDPSNVSDAAAIGSRVFSPVVPSMQWRPGSSFQNPNEGGQFRGRAEIAPDQREKFLQRLQ
QVQQQGHSTLLSMNLGGGNNKQFSSQQQSSLLQQFNSQNSSVSSQAGLGIGVQAPGVNVV
TSGSLQQQPSSFQQSNQQALMTSGAKESDVAPVKVEEQQQPQQQQSLPEDTTTDSAAGSV
LGKNLMSDDDLKGAYPVDTPVGVPVSLTETASVSREDDLSPGQPLQHGQPSKSLGVIGRR
SVSDLGAIGDNLGGSSLTTSGMHDQFHNLQMLEAAFYKLPQPKDSERPRSYTPRHPAVTP
PSYPQVQAPIINNPALWDRLGLETYGTDTLFFAFYYQPNTYQQYLAARELKKQSWRYHRK
YQTWFQRHEEPKVATDEYEQGTYVYFDFHFNNDDLQHGWCQRIKTEFTFEYNYLEDELNI
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgaaagcttcaaggggagattgaccgggttcttaagaaggtccaagaa
ggggttgacgtctttgacagcatttggaacaaggtttatgataccgacaattccaatcag
aaggagaagttcgaggcggatttgaagaaggagataaagaagcttcagaggtacagggac
caaattaagacctggattcagtccagtgagattaaggacaagaaggtcagtgcctcttat
gagcaggctttgttggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatt
tgtgaaaaggagacgaaaaccaaagccttctcgaaagaaggtttgggtcaacagcctaaa
actgacccaaaggagaaagctaaatcagagacacgagattggttgaacaatttggttagt
gagttggaatctcagattgataattttgaagctgagatggagggtctatctgtgaagaag
ggaaaatcaaggccacctagattgattcatctggaaacttctattactcggcacaaggct
catataatgaagctggaactaatcttgagactgcttgataatgatgaattgagtcatgag
gatgtcaacgatgtcagggagtttttagaagactatgtggaaaggaatcaggaggatttt
gatgaattcagtgatgtggatgatctttacagctcattgccactcgataaggtggaatcc
cttgaagatctgggtacaatttgccctcctagccttgtgaagggtacaacagctctcagc
ttgaagactactttggcaacaacgggaactcaagtgcctgttactgttgctcctaatcat
caaccaaatactgtcactcaggatcaggttgatgattcaactttgccagatggtaacact
gatactcttttgaagaccccacctcctaagaatagtgtccttggttcttctgctgctaca
acacctaccgggaaccatgcagcctccacttccttgaatggtgcagtgcatgggtctggc
ttgtctgctacatcagccattcttccaggttcaagttctgttcgtgctgtggaggctacg
ggtgctcctaattcatctccggtaaatatgcccacttctgcaaaggatgaagaaatttct
agcttcccaggccgtaaattgtctccatcatttgcggatactggacttgtaaggggtggc
atgggaagaggtgtcactgctaatcaaccagcctctagttccacccatacttctggtatt
gtggttcctagcactataactcttggtaacgtttcttctgcctctgaagtcacaaagaga
aacattttgggatctgaagaacgggctggtaacagtggcttggtgcagtctatggtttct
cctttaagtaatagaatggttttgcctacagcagctaaacctagtgatggaacgagctca
gttgatcctagcaatgttagtgatgcagcggctataggaagtcgagttttctctccagtg
gttcctagcatgcagtggaggccaggaagttcttttcaaaatccgaatgaaggagggcag
ttccgtggaagagctgaaatagcgcctgatcagagagagaagttcttgcagcgtctccag
caagttcagcaacagggtcatagtacacttcttagcatgaatcttggtggagggaacaac
aaacaattttcttcgcaacagcaaagttcacttctacagcagttcaactcccaaaattca
tctgttagttctcaagctggtctgggaattggagttcaagcaccaggagttaatgttgtt
acatctggttcattacagcagcagccaagttccttccagcagtctaatcagcaggcatta
atgacaagtggggcaaaagaatctgatgttgcccctgtaaaagttgaagagcagcagcag
ccacagcagcaacagagtttacctgaagatactactactgattctgctgctggttctgtc
cttggaaagaatctgatgagcgacgatgatttaaaaggcgcatatccagttgatactcca
gttggcgtacctgtttcattgactgagactgcttcagtgtcgagagaggatgacctttct
ccaggtcaacctttacagcatggtcaaccttctaaaagtcttggtgtcattggccgaaga
agtgtttctgacttgggtgccattggtgataacctcggtggatcctcgttgactactagc
ggaatgcatgatcaattccataatttgcaaatgcttgaggctgcattctacaagctacct
cagccaaaagactcggagcgtccgaggagctacactccaaggcaccctgcagttactcct
ccgagctatcctcaagtgcaggcacctattataaacaatcctgctttatgggaccggtta
ggtcttgagacctatggcactgacacattgttctttgcattttactatcaaccgaacacc
tatcaacaatatttggctgctagagaattaaagaagcaatcttggagatatcacagaaaa
tatcagacatggttccaaagacatgaagagccgaaagttgctacagatgaatatgagcag
ggaacttatgtgtacttcgatttccattttaataacgatgatctacaacatggatggtgc
caaaggattaaaacagagttcacttttgagtataactaccttgaagatgaactcaacata
tag
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