Cucurbita pepo subsp. pepo (vegetable marrow): 111801045
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Entry
111801045 CDS
T05351
Name
(RefSeq) phytochrome B-like isoform X1
KO
K12121
phytochrome B
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111801045
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_3
Motif
Other DBs
NCBI-GeneID:
111801045
NCBI-ProteinID:
XP_023540778
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Position
LG08:complement(975509..981726)
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AA seq
1137 aa
AA seq
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MVSSNRGTNSHQQQAESSNTNTNTNTSHMRSNRTESISKAVAQYTIDARLHAVFEQSGES
GKSFDYSQSIRTSTQSVPEQQITAYLSMIQRGGHIQPFGCMIAIDEANFRVIAYSENTRE
LLGLTPQSVPNLEKIEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWVHSKNSLK
PFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISKLQALPGGDIKLLCDT
VVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQN
RVRMIVDCHASPVRVIQAAGLMQPLCLVGSTLRAPHGCHSQYMANMGSISSLAMAVVINN
NDDEAIGGRSSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEK
HVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDV
VEWLLAFHGDSTGLSTDSLADAGYPGAALLGGAVCGMDVAYITKRDFLFWFRSHTGKEIK
WGGAKHHPADKDDGQRMHPRSSFKAFLEVVKSRSLPWETAEMDAIHSLQLILRDSFKDNA
AINSKTVVHPQLGDLNLQGIDELSLVAREMVRLIETATAPIFAVDVDSCINGWNTKIAEL
TGLAVEEAMGKSLVRDLVYKESEEIVDKLVSRALKGEEEKNIEIKMKTFGRDPDDQRQPI
FVAVNACSSRDYTDNIVGVCFVGQDLTCQKVFMDKFISIQCDYKAIVHSPSPLIPPIFAS
DDNTCCSEWNTAMENLTGWSREDIIGKMLVGEVFGDCCRLKGPDELTKFMIVLHGAIGGK
NNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFVQIASLELQQTLRMQRQQEKN
RFVRMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVSCEKQMLKIIEDMD
LESIDDGTMEIEKGEFLLGSVINAVVSQAMLLLRERNLQLVRDIPEEVKTMAVYGDQVRI
QQVLADFLLNMVRYAPSPEGWVELRVCPFLKQNSDRLRLARTEFRIVCPGEGLPPELIQD
MFHSGRWATQEGLGLSMCRKILKLMNGEVQYIRESERCYFSITLELPLTERALGDIG
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggtttcgagtaatcgggggacgaattcgcatcagcaacaagcagagtcctcgaacacg
aacacgaacacgaacacgagccatatgcgatctaatcgtacagaatccatcagcaaagcc
gtagcgcagtacaccatcgatgctcgtcttcacgcagtgtttgaacagtcaggtgagtcc
ggtaaatcttttgactactcacaatctattagaacttcgacacaatctgtgccggagcag
caaattactgcttatttatcgatgattcaaaggggcggccatatccagccctttggatgt
atgatagccatcgatgaggcaaattttcgggttattgcttatagtgaaaacactagggaa
ttgcttggtcttactcctcaatcagtgccaaatcttgaaaagatagagattctcacaatt
ggaactgatgtacggaacttgttcacttccaatagtgcaattttgcttgagaaagcattt
ggggctcgagaaatcactttgttaaaccctgtttgggttcattctaagaattctttgaag
ccattttatgctattttgcataggattgatgtcggaattgtgattgatttagagccagca
agaacggaggatcctgccctttctattgctggggcagtccaatcgcaaaagcttgcagtg
cgtgcaatttctaagctacaagcactccctggtggagatattaaactgttgtgtgatact
gtggttgagagtgttagggagcttactggatacgatcgagttatggtgtataagtttcac
gaagacgagcacggtgaggttgtcgctgaaagcaagaggcctgacttagagccatacatt
ggattgcattatccttctactgatattcctcaggcatcgaggtttttgtttaagcaaaac
cgtgttagaatgattgtcgattgccatgcttctccagttcgtgtaattcaggctgcaggg
cttatgcaacctctttgcttagtgggttcgactcttcgtgctccccatggctgtcattct
cagtatatggccaatatgggctccatttcgtcgttagcaatggcggttgttatcaataat
aacgacgacgaagctattggtgggcgaagttcaacgaggctttggggtttggttgtttgc
caccatacttcggctcggtgtattccgttccctctccggtatgcatgtgagtttctaatg
caagcatttggacttcaacttaatatggaattgcaattggcttcacagatgtctgagaaa
catgttttgagaactcaaactcttttatgtgacatgcttcttcgtgattccccaactggc
attattactcagagtccaagcatcatggacttagtaaagtgtgatggggcagctctttac
tatcaagggaagtattaccctctaggcgtgacgccaaccgaagcccaaataaaggacgtc
gtggaatggttgctagctttccatggcgattcaactggtttaagtacagacagcttggcc
gatgctggctatccaggggcagccttgcttggtggtgcagtttgtggaatggatgttgcc
tatatcaccaaaagggattttctcttctggttccgatcgcacacaggaaaagagatcaag
tggggcggcgcaaagcatcacccagcggataaggacgatggtcaaagaatgcatccacgt
tcttcgttcaaggcatttctagaagtagtaaaatcgcgtagtttaccgtgggagactgca
gaaatggatgctattcactcattgcagcttattcttcgagattcattcaaggataacgct
gcaatcaattcgaaaacagttgtgcatcctcaactaggggatctcaacttgcaagggatc
gatgagctcagcttggttgctagagaaatggtcaggttgatcgagactgcaactgctcca
atctttgctgtagatgtcgacagctgtatcaatggatggaacactaagatagcagagttg
actgggcttgcagtcgaggaagctatggggaaatccctagttcgtgatctcgtgtataaa
gaatctgaagaaatagtcgacaaactcgtttcccgggctttaaaaggtgaagaagaaaag
aatatagagataaaaatgaagacatttgggcgagatccagatgatcaaagacagccaatt
tttgtggctgtcaatgcttgttctagcagggactacactgataacatagtaggcgtttgt
tttgttggtcaagatcttacctgccaaaaagtgttcatggacaaatttattagcatacaa
tgtgattataaagccattgttcatagtcccagtcctcttatccctccaatattcgcttcg
gacgacaatacgtgttgctcggaatggaataccgccatggaaaacctcaccggatggtcc
agagaagacataattggaaaaatgctagtaggggaggtttttggagattgttgtagactg
aaggggccagatgaattgaccaaattcatgattgtcttgcacggtgcaattggagggaag
aacaatgaaaaattccccttttctttttatgacaaaaaggggaaatatgtgcaggctctg
ttgacagcaaataagaggatgaatatggaggggcagattgttggagctttctgctttgtt
cagattgccagtcttgaattgcagcaaactcttagaatgcagaggcaacaggagaagaac
cggtttgtaaggatgaaagagctggcttacatttgccaggaagtgaagagtcctttgagt
ggtatacgctttactaactcgcttctggaggctacggatttgagtgaagaccagaagcag
tttctggagaccagtgtttcttgtgaaaagcagatgttaaagattatagaagatatggat
ttggaaagtattgatgatggtacaatggagattgagaagggggagttcttactgggaagt
gttattaatgctgttgttagtcaagcgatgttactactcagagaaagaaacttacaactg
gttcgtgatataccagaagaagtaaagactatggctgtatatggcgatcaagtgagaatt
caacaggtcttagctgatttcttgttgaacatggtgcgttacgcaccgtctccggaaggc
tgggtagaattacgtgtctgtccattcctgaagcaaaactcggatcgacttcgtctcgca
cgcaccgaattcaggattgtatgccctggggaaggtctacctcctgagttgatacaggac
atgtttcacagtgggcgatgggcgactcaagaaggattagggttgagcatgtgcagaaag
attctgaagctcatgaatggtgaagtccaatacatcagagaatctgaaagatgttatttc
tcgatcactctcgaactccctttaacagagagagccctcggcgacatcggttag
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