Cucurbita pepo subsp. pepo (vegetable marrow): 111801315
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Entry
111801315 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111801315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111801315
03012 Translation factors [BR:
cpep03012
]
111801315
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111801315
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111801315
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111801315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
dsrm
HA2_N
AAA_22
ATPase
AAA_19
nSTAND3
Dicer_dimer
AAA_11
NACHT
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111801315
NCBI-ProteinID:
XP_023541029
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All DBs
Position
LG09:1974303..1985754
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AA seq
1180 aa
AA seq
DB search
MPYPHLLPSLQFSKPPKPSHSFPHFAMKDRSPSSNAAVYVPPHLRLRFVLTSSNHSPTVS
AVHCKIRQAEAPAPPSLHAPSQELFDSAYRNRAPVESQDCNFEFSNQSGVSPAVNIDLWK
RKLALLLRDKDMQEVVSREKKDRHDFEQLAALASSMGLFSHLYAKVAVFSKVPLPNYRFD
LDDRRPLREVSLPPWLLRRVDEHLGEFLSQKSRFEGFQDISDYRSISSGGIATDEGLFEQ
PELQASSKAVMEQILRRRSLHLREQQHARQSSPEGREMLEFRKSLPAYKEKDAILTTISQ
NQVTIISGETGCGKTTQVPQFILESEVESLRGAGCSIVCTQPRRISAMSVSERVASERGE
KLGESVGYKVRLEGIKGRETHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDF
LLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFAHPVRTHFLEDILEMT
GYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASSVQETLMAADFKEYSLQTQESLSSW
NPDCLGFNLIEYLLVRICESEIPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVLLLAC
HGSMASSEQRLIFIEPDKGMRKIVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTS
CLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFNAFAEYQLAEILRTPLQSLCLQIK
SLKLGSISKFLSRALQSPEPLAVQNAIEYLKIIGAFDENENLTVLGRYLILLPMEPKLGK
MLILGAILNCLDPILTIVAGLSVRDPFLMPLEKKDAAEAAKSQFSQDHSDHLAIIRAYRG
WKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYLDSYNAWSLDEHL
IRAVICYGLYPGVCSIVHNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWLVFNEKIKV
NSIFLRDSTAISDSMLLLFGGNISKGDHDGHLKMLSGFLEFFMKPDVAEMYQKLRLKLEE
LIQKKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFARQIFQQPSMASTTLAAAPTSV
SRTESRPGGDNSKSQLQTLLTRAGYAAPTYKTMQLKNNQFRATVEFNGLQIMGQPCTNKK
NAEKDAAAEALECLMGGTRLGHEYINQMSLMLKRNKKDHN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccatatcctcatcttcttccttctcttcaattctccaaacctccaaaaccctcccat
tcttttcctcatttcgcaatgaaggaccgctctccttcctccaatgccgccgtctacgtc
cctcctcacctccgtctccgcttcgttcttacttcttccaatcattcccctactgtttcc
gctgttcactgcaagattcgccaggcggaggctcctgctccgccttctctgcacgctcct
tctcaggaactgttcgattccgcctatcgcaatagggctccggtcgagagtcaggattgt
aattttgagttttcgaatcaatcgggtgtttcacctgccgtcaatattgatttgtggaaa
agaaagttggcattactcttacgtgacaaggacatgcaagaggtagtttcaagggaaaaa
aaagatagacatgattttgagcaattagctgctttggcgagtagcatgggactttttagc
catctatatgccaaagttgcggtttttagtaaggtcccattgccgaactacagatttgat
ttggatgatcggcgtccactgagggaggtctctttgcctccttggttgcttagaagagta
gatgaacatctgggagagtttctctctcagaagtctaggtttgaaggttttcaagatatc
tctgactatagatcaattagcagtggtggcattgctacagatgaagggctttttgagcaa
cctgagctacaagcatctagtaaggctgtgatggaacaaattcttcggcgaagaagtttg
catctgcgtgaacaacagcatgctcggcagtcatctcctgaaggaagagaaatgctggag
tttcggaaaagtctccctgcttacaaggagaaggatgcaatattgaccacaatctcacag
aatcaggttactattatatcaggtgaaactggttgtggcaagactacgcaagttccccaa
ttcattttggaatcagaagtagaatcacttcgtggagctggttgcagcatcgtatgtaca
cagccaagacgaatatctgctatgtctgtctctgagagagtcgcttctgagagaggggag
aaattgggtgaatctgttggttataaagtgcggctggagggtataaaggggagggagact
catctactcttttgtaccacgggcatcttgttgagaagattgttggttgatagaaatttg
aaaggcataactcatgttattgttgacgaaatccatgaacgtggaatgaatgaagatttt
ctgcttattgtcctgaaagatctccttcctcggcggccagaattgaggttgattctaatg
agtgcaactttagatgctgaacttttctcatcctactttggcggtgctcaaattattcac
attccgggattcgcacaccctgtccgaactcattttctggaggatattctagaaatgacg
ggttacagattaactccatacaatcaaatagatgattatggtcaagagaagacatggaaa
atgagcaaacaagcaccaagaaagaggaaaacccagattgcctcctctgttcaggaaaca
cttatggcagctgattttaaggagtacagtcttcaaactcaggagtctttatcgtcttgg
aatcctgattgtcttggttttaatctcattgaatatctcctagtccgcatatgtgagagt
gaaatacctggagctattcttgtttttatgactgggtgggatgacatcagttctctgaaa
gagaaacttcagtctcaccctttattaggagatccaactcgtgtattgttgttggcttgc
catggttcaatggccagttcagagcagaggttaatatttatcgaacctgacaagggaatg
agaaagatagtgcttgcaacaaatattgctgagacaagtatcactataaacgatgttgtg
tatgttctggactgtggaaaggcaaaagaaacatcgtatgatgctttaaataacacttct
tgtttgcttccctcatggatatccaaggtttctgctcaacaaagaagaggaagggctggc
cgtgttcaaccaggcgaatgttatcatctataccctaggtgtgtgtttaatgcttttgcg
gagtatcagctggcagaaattttgagaacacctttacagtccctctgcttgcaaataaaa
agcctaaagcttggaagtatatcgaagtttctatctagggctttgcagtcaccagagccc
ctagcggttcagaatgctattgaatatttgaagatcattggagcatttgatgagaatgaa
aatcttactgtattaggtcgttatttgattttgctcccaatggagccaaaactgggaaag
atgttgatattaggtgctattctcaattgtttggatccaattttgaccattgttgctggc
ctcagtgtgagggaccctttcctaatgccactggagaagaaggatgctgcagaggctgca
aagtcccaattttcacaagatcatagtgatcaccttgctatcatccgggcttatagggga
tggaaagaagcagagaggaactttggtggatatgacttctgttggaagaacttcctttct
gtacaatcaatgaaggctattgattcactgaggaaggagtttttctccttgcttagagat
actggcttggttgatgggtacttggactcctacaatgcttggagtcttgatgaacatctc
atacgtgcagttatttgctatggcctatatcctggagtttgctctattgtgcataacgag
aagtcattttctctcaaaactatggaggatggccaggtgcttctctattcgaactcggtc
aacgcccgagagtcgcggattccatatccatggctagtattcaatgagaagataaaagtg
aactctattttccttcgagattcaacagctatttctgactcaatgctgcttctctttggt
ggaaacatctcaaagggtgatcatgatggacacttgaaaatgttgagcggttttttggaa
ttttttatgaaacctgatgtagctgagatgtatcagaaattaagattgaaacttgaagag
cttatacagaagaaactactaaatccaaagatggacttgcactcccaccatgagctccta
tctgctgtacgcttgcttatttcagaagatcagtgtgaaggtcgattcgtttttgcacgc
cagatctttcagcagccctccatggcatctactactttggcagcggcaccaacttctgtt
tcaagaactgaaagtcgacctggtggtgacaattctaaaagtcagctccagacattacta
acgagggctggatatgctgcacccacctacaagactatgcaattgaagaacaatcaattt
cgagcaactgtggaatttaatggactgcaaattatgggacaaccttgtaccaacaaaaag
aatgcagaaaaggacgcagcagctgaggctcttgagtgtttgatgggtggaactcggttg
gggcacgagtatatcaatcaaatgtctctgatgctaaaaaggaacaagaaggatcataac
taa
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