Cucurbita pepo subsp. pepo (vegetable marrow): 111801417
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Entry
111801417 CDS
T05351
Name
(RefSeq) chaperonin 60 subunit beta 4, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111801417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111801417
03110 Chaperones and folding catalysts [BR:
cpep03110
]
111801417
03029 Mitochondrial biogenesis [BR:
cpep03029
]
111801417
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpep04147
]
111801417
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
111801417
Messenger RNA biogenesis [BR:
cpep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
111801417
Chaperones and folding catalysts [BR:
cpep03110
]
Heat shock proteins
HSP60 / Chaperonin
111801417
Mitochondrial biogenesis [BR:
cpep03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
111801417
Exosome [BR:
cpep04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111801417
Exosomal proteins of other body fluids (saliva and urine)
111801417
Exosomal proteins of breast cancer cells
111801417
Exosomal proteins of colorectal cancer cells
111801417
Exosomal proteins of bladder cancer cells
111801417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF8152
Motif
Other DBs
NCBI-GeneID:
111801417
NCBI-ProteinID:
XP_023541180
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All DBs
Position
LG09:complement(1432377..1438808)
Genome browser
AA seq
590 aa
AA seq
DB search
MASSPTPISPLSFPNRRSKPKPNKPPPSLPPPWKPSPKSMPKEIYFNRDGSALKKLQVGV
DLVAELVGVTLGPKGRNVVLQSKYGPPKIVNDGETVLKEIELEDRLENVGVKLVRQAGAK
TNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELKLMSREVED
HEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSVDNSLQIVEGMQFDSGYLS
PYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQAALAP
VIRNKLRGVLKAAAVKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTGNEVLGSAT
KVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTEEKFPKKILNERIARLSGRIAILQV
GAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENEEQMIG
AEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDMNYGYNAATDHYEDLMKAGIMDPSK
VVRCCLEHAASVAKTFLTSDAVVVDIKEPEPFPRRTPLPISGIKRNGSLA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcccccactcccatctctccactatctttccccaatcggagatcaaaacca
aaaccaaacaaaccgcctccttcattgcctccgccgtggaaacccagccccaaatctatg
cccaaggagatttacttcaaccgcgatggctctgccttgaaaaagcttcaggtcggtgtt
gatttggtggcggagttggtcggtgttacgttagggccgaaggggaggaatgtagtgctt
caaagcaaatatggtccgcctaagatcgtcaacgacggggaaactgtcctcaaagagatt
gaattggaagaccgtttagagaacgttggggtgaaattggtaagacaagctggtgcaaaa
acaaatgaccttgctggtgatggttccactacatctgtcgttcttgcccagggattaatt
gctgagggtatgaaggttatttcatctggcatgagtcctgttcaaattgcacgtgggatt
gagaagactgcaaatgcactagtttctgagctgaaattgatgtcaagagaggttgaagat
catgagatcgcacatgttgctgcagttagtgcagggaatgattatgctgtgggaaatatg
atttcagatgccttacgtcaagttggaaggaaaggagtcgtccaaattgaaaaggggaag
agtgtcgataacagtctgcaaattgttgaagggatgcaatttgattctggatatttgtct
ccgtactttgttactgatagacagaagatgatagtagaatttcatgattgcaagttactg
ttggtcgacaaaaaaatctcagatccaaaggagatgtttaaaatattggacagtgcagtg
aaagagaagtatccaattgtgatcttggcagagggcattgagcaggcagctttggctcca
gtaattaggaataaacttagaggtgtgctgaaggcagctgctgtcaaggctcctgccttt
ggcgaacgcaagagtcactacttagatgacatagcgaccctaactggagcaactgtgatc
agagaagatagtggactgactttagaaaagaccggcaacgaggtattgggctctgctact
aaggttgttataacgaaggattccacactaatagttacagatgggactactcgggaagca
gttcaaaaaagggttttacaaattcaaaagcttttggagaatactgaggaaaaatttcca
aagaagatattgaatgagagaattgctagactatctgggcgaattgctatacttcaggta
ggagcacaaactcaagttgaattgaaggataaacagttaaggattgaggatgccttgaat
gcgtcaaaggctgcaattgaagagggtgttgtcgttggtggtggttgttgtcttttaagg
ctgtcaaccaaggtggatgctataaagaatgtcctggaaaatgaagagcagatgattggt
gccgaaattttcaaaagggctttgagttatcctacaagactaattgcgagaaacgccggt
gttaatggaagtgtggttatagataaggttctaattaacaatgatatgaattatggatat
aatgccgccacagaccattacgaggatttaatgaaagctggaatcatggatccatcgaag
gtcgtcagatgttgcttggagcatgccgcttctgttgcgaaaactttcctgacatccgat
gctgttgtagttgatatcaaggaaccagaaccctttccaagaagaacgccgttgcccatc
tcaggcatcaaacgaaatgggtctttagcttga
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