Cucurbita pepo subsp. pepo (vegetable marrow): 111801684
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Entry
111801684 CDS
T05351
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03420
Nucleotide excision repair
cpep04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111801684
09124 Replication and repair
03420 Nucleotide excision repair
111801684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpep04121
]
111801684
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111801684
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
111801684
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
111801684
TCR (transcription coupled repair) factors
Cul4-CSA complex
111801684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
111801684
NCBI-ProteinID:
XP_023541553
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All DBs
Position
LG09:complement(6774475..6788996)
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AA seq
1091 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTAQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDTESSELITRAMGDVSDRIGRPTDSGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSRPTIVVL
YQDNKDARHVKTYEVVLKDKDFVEGPWSQNNLDNGAAVLIPVPPPLCGVIIIGEETIVYC
SATAFKAIPIRPVXTRAYGRVDADGSRYLLGDHAGLLHLLVITHEKERVTGLKIELLGET
SIASTISYLDNAFVYIGSSYGDSQLVKLNVQPDTKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFNSQVQTLFCHDALYNQLVQITSSSVRLVSSTTRELR
NEWSAPSNYSINVATANASQVLLATGGGVLVHLEICDGLLVEKKHIQLEHEISCLDINPI
GDNPNSSQLAAVGMWTDISVRIFSLPDLNLLTKEHLGGEIIPRSVLLCTFEGISYLLCAL
GDGHLLNFIINTNSNSCELMDRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNK
KLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRI
CHQEQSRTFAICSLRYNQSGTEDTEMHFIRLLDDQTFESISTYALDTYEYGCSILSCSFS
DDSNVYYCVGTAYVMPEENEPTKGRILVFVVEEGKLQLIAEKETKGSVYSLNAFNGKLLA
AINQKIQLYKWTLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHE
EGAIEERARDYNANWMSAVEILDDDIYLGAENYFNLFTVRKNSEGATDEERSRLEVVGEY
HLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGSVNGVIGVIASLPHDQYVFLEKLQSNLR
KVIKGVGGLSHEQWRSFNNEKRTAEAKNFLDGDLIESFLDLNRSKMEDISLAMGVSAEEL
CKRVEELTRLH
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtctggaactatgtcgtcaccgctcacaagcccaccaacgtcactcattcctgc
gtcggcaacttcaccggtccacaggagctcaacctcattatagcgaaatgtacccgtatt
gaaattcatttgctcactgctcaaggcttacagcctatgttggatgttccaatatatggg
aggattgcaacattggaactttttcgccctcatggtgaagcacaagattttcttttcata
gcaactgagcggtacaagttctgtgttcttcaatgggataccgagagttctgagcttatt
acaagggcaatgggggacgtctcagatcgcattggtcgtcctactgacagtggtcagatt
ggtattatagacccagactgtagattgattggacttcacttatatgatggtctgttcaag
gttattccttttgacaataaaggacagctcaaagaggcatttaacatcaggctcgaggaa
cttcaagttttggatatcaagtttctttatggttgttcaaggcctacaattgtagttctt
tatcaggataataaagatgctaggcatgtcaaaacctatgaggttgttctaaaggacaaa
gattttgtcgaaggcccgtggtcccagaacaatcttgacaatggggctgctgtcctgatc
cctgtgcccccaccactatgtggtgtcatcattattggagaagagactattgtttactgc
agtgccacagcatttaaagcaatacctattagacctgtttncaccagagcatatggaagg
gttgatgctgatggttcaaggtacttgcttggtgatcatgctggtctacttcacctactt
gtcataacccatgaaaaagaaagggtcactggacttaagattgagttgttgggggaaaca
tctattgcttctacaatatcatatcttgacaacgcttttgtatatattgggtcaagctat
ggggactcacagcttgttaagctaaatgtacaacctgacacaaaaggatcatatgtagaa
gtcttggagaggtatgtcaacttgggacctattgttgatttttgtgtggtagaccttgag
aggcaaggccaaggccaggttgtaacatgctctggagcttataaggatggttctcttcgt
gtagttcgcaatggaattggaattaacgaacaggcatctgtggaacttcaaggaataaaa
ggaatgtggtcactgagatcttctactgatgatccattcgatacatttctcgttgtaagc
tttattagtgagactagaattttggcaatgaatctggaggatgaattggaggaaacagag
atagaaggtttcaactctcaagtgcagacattgttttgccatgatgcactatataatcaa
cttgttcagattacgtcaagctctgtaagattagttagttctaccactagagaacttcgc
aatgaatggagtgcaccttcaaactactctatcaatgttgccactgctaatgcctcccag
gttttattggcaactggcggtggtgttttagtgcatttagagatttgcgatggattattg
gtcgaaaagaaacatatacagttagagcatgagatttcatgcctcgacataaacccgatt
ggtgacaaccctaattctagtcagcttgctgcagttggaatgtggactgacataagtgtc
agaatattttcactacctgacctgaatctcctcacaaaggaacatttgggaggagagata
atacctcgttcagttcttctttgcacttttgaagggatatcttacttgctgtgcgccctt
ggagatggtcatctgttgaactttataataaacacaaattcaaattcttgtgagctaatg
gacaggaaaaaggtttctcttggaacccagcctataacactccgtacattttcatcaaag
aatgctactcatgtatttgcggcatcagatagacctacagtcatttacagcagtaacaag
aaactactttacagtaatgttaatctgaaggaagttagccatatgtgtcctttcaattct
gctgcttttccagacagccttgcaatagcaaaagaaggagaacttacaattggcactatt
gatgatattcaaaagcttcatatccgctctatcccgcttggggaacatgcacgtcgtatc
tgccatcaggagcagtccagaacatttgccatttgtagtttgagatataaccaatcaggc
acggaagacactgaaatgcattttattcgcttattagatgatcaaacctttgagtccata
tcaacctatgctcttgacacttacgaatacgggtgttcaattcttagctgctctttctca
gacgatagtaatgtatattactgtgttggaactgcatatgttatgccggaagaaaacgaa
ccaaccaagggccggatattggtttttgttgttgaggaaggtaagctgcagcttattgct
gaaaaagaaaccaagggatctgtttattccttgaatgccttcaacggaaagctgctggct
gctattaaccagaaaattcaattatacaagtggacacttcgggacgatggaactcgtgag
ttacaatctgaatgtgggcaccatggacatatactcgctctctatgtgcaaacccgtgga
gatttcattgttgttggtgatttgatgaagtccatttctctgttaatctacaagcatgag
gaaggtgccattgaggagcgagcccgtgactacaacgcgaattggatgtcagcagttgaa
attctcgacgacgatatttacctcggtgctgaaaattacttcaacctcttcactgttcga
aagaatagtgaaggagcaactgatgaggagcgcagccgcctagaggtggttggtgaatac
cacctcggtgaatttgttaatcggttccgacatggttcccttgtaatgcgattaccagat
tccgacgtgggccagattccgacagtcatttttggctctgtcaatggcgtaattggggtc
attgcttcacttcctcacgatcaatatgtgttcttggagaagctccaatccaacttgagg
aaagtgataaagggtgtaggaggactgagccatgagcagtggaggtctttcaacaacgag
aaaagaactgcagaagcaaaaaatttcttggatggagatctaatcgagtcgttcctcgac
ctcaaccgcagtaaaatggaagacatctctctggcgatgggcgtttcggccgaggagctg
tgcaagagagtagaggaattgacaaggttacattga
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