Cucurbita pepo subsp. pepo (vegetable marrow): 111801872
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Entry
111801872 CDS
T05351
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111801872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111801872
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111801872
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
111801872
NCBI-ProteinID:
XP_023541841
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Position
LG09:3306736..3309667
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AA seq
453 aa
AA seq
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MEEDIDGDLADLESLNYDDLDNVSKLQKSQRYSDIMQKVEDALQKDSNISNQGLVLEDDP
EYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL
TLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALALDSAKKMVLNFVES
RMGYIAPNLSAIVGSAVAAKLMGTAGGLGSLAKMPACNVQLLGAKKKNLAGFSTATSQFR
VGYIEQTEIFQSTPPPLKMRACRLVSAKSTLAARVDSTRGDPTGKTGRVFKDEILKKIEK
WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYATTEMRKLANRMQFGVPEESSLGD
GLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKFKEKRYGSSGATSGLTSSLAFTPVQGI
ELSNPQAHLNQLGGGTQSTYFSETGTFSKIRKN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggatattgatggggaccttgccgacctagaaagccttaattatgatgatctt
gataatgtctcaaaattgcagaaatcacagagatacagtgatataatgcagaaagtggaa
gatgcattacagaaggattctaatatttcaaatcaaggattagtattggaagatgatcct
gagtaccaactgattgtggagtgtaatgctttgtcggtggatattgagaatgaaattatt
attattcacaattttatacgtgataaatatcgattgaaatttccagagcttgaatcactt
gtgcaccacccaatcgattatgctcgagttgttaagaagattggcaatgaaatggatttg
actcttgtagacttagaagggcttttaccttctgctgtcattatggttgtctcagttaca
gcatctaccacaagtggcaagccacttccagaggaaattctccagaaaacaattgatgca
tgtgaccgggctcttgctttagattcagcaaagaaaatggttctcaactttgttgaaagt
agaatggggtatattgcaccaaatctttcagccatagttggaagtgctgttgcagcaaaa
ctaatgggaactgctggtggtcttggttctttagctaagatgcctgcttgcaatgtccag
cttcttggtgcgaagaaaaagaacctagctgggttttccacagcaacttcacagtttcgg
gtaggttacattgagcaaacagagatattccaatcaacacctccccctttgaagatgcgt
gcttgtcgacttgtatctgcaaaatcaacacttgcagcacgagttgactccaccaggggc
gatcctactgggaagactggaagagtttttaaagatgagatccttaagaaaattgagaag
tggcaagaacctccaccagctaaacaaccaaaacctcttccggtccctgattctgaaccc
aaaaagaagagaggtggccgtcggctaaggaagatgaaggaaagatatgcaacaacagag
atgaggaagctagccaacaggatgcagtttggggtgcctgaagagagttctttaggagat
ggattaggggaagggtatggaatgcttggtcaggctgggagtggcaagctgcgtgtgtca
gctgctcagagcaagcttgccgcaaaagttgttaagaagttcaaggaaaaacgttatgga
agcagtggtgctacgtccggcctgacgtccagtttagcatttacacctgtacaagggatt
gagctgtcaaatcctcaggctcatttgaatcaactaggcggtggaactcaaagcacctac
ttttctgaaacgggaacattttcaaagatcaggaaaaactaa
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