Cucurbita pepo subsp. pepo (vegetable marrow): 111801903
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Entry
111801903 CDS
T05351
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
KO
K03267
peptide chain release factor subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111801903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111801903
03012 Translation factors [BR:
cpep03012
]
111801903
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111801903
Translation factors [BR:
cpep03012
]
Eukaryotic type
Release factors
111801903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
G-alpha
EF-G_D2
WD40_alt
Motif
Other DBs
NCBI-GeneID:
111801903
NCBI-ProteinID:
XP_023541896
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Position
LG09:9658481..9667242
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AA seq
531 aa
AA seq
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MDIEEDIRALELDSPDVNGVPKPDEKMENIVKSDNVEEDAKTEDIEKSDKMEEEWRTEDH
PQSAQDIHVEEQVEESISAKEKEVSSTVNEDEGDLETDRKRHLNVVFIGHVDAGKSTIGG
QILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETT
RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGV
AKLLVVVNKMDEPTVKWSKERYEEIESKMAPFLKSSGYNVKKDVQFLPISGLHGINMKAR
VDKKVCPWWNGPCLFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGD
SLWVMPNKTQVKVAAVMCDENKVKWAGPGENLRVRITGIEEEEITSGFVLSSVAKPIAAV
SEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLHQIDPKTRKPMKKKVLFVK
NGAVILCRIQVNNLICIEKFSDFPQLGRFTLRTEGKTVAVGKVTDIPAATN
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgaggaggatattcgtgcattagaacttgattcaccagatgttaatggtgtt
cctaaaccagatgaaaagatggaaaatattgtgaaatccgacaatgttgaagaagatgca
aagacagaagatattgagaagtccgataaaatggaagaagagtggaggacagaggaccat
cctcaatcggcccaagatatccacgttgaagaacaagtggaggagagcatatctgcaaag
gagaaggaagtttcttcgactgtaaatgaggatgaaggggatttggaaacggatcgcaaa
agacacttgaatgttgtgttcattggtcatgttgatgctggtaagtctacaattggtggt
cagatacttttccttagcaatcaggttgacgagcgtacgatccaaaagtacgaaaaagaa
gcaaaggataaaagcagagaaagctggtatatggcatatatcatggacacaaatgaagag
gagagagtcaaggggaaaactgttgaagtgggaagagcacattttgaaactgagaccaca
aggtttacaattttggatgctccaggtcacaaaagttatgtcccaaatatgatcagtggg
gcatctcaagctgatataggggttctggtaatttctgctaggaaaggagagtttgaaact
ggatatgagagaggtggacaaactcgtgagcatgttttgctggcaaaaacattgggtgtt
gcgaagcttctcgttgtagtgaataagatggatgagcccacagtcaaatggtccaaagaa
aggtatgaggagatagagtctaagatggcacccttcttaaagtcatctggttacaatgta
aagaaagatgtccaatttttacctatatctggtcttcatggtattaacatgaaagcaaga
gtggataagaaagtatgtccgtggtggaatggtccgtgcttgtttgaaatccttgatacg
attgaaggtccaccaagaaatccaaaagatccatttaggatgcccatcatcgataaattc
aaggacatgggaacgaccgtcatgggtaaagttgaatctggcaccgtgcgtgagggtgat
tccttatgggtaatgccaaataagactcaggtgaaagttgctgctgtgatgtgtgatgaa
aataaagttaagtgggcaggacctggcgaaaatcttcgtgttagaataactggaattgaa
gaagaagaaataacgtctgggtttgtactatcaagcgttgcaaaaccaatagccgctgtt
tctgagtttgttgcgcagttgcagattcttgagctgctggataatgcaatatttaccgct
ggatataaggccgtacttcacattcatgctgttgttgaagaatgtgagatcatagagctg
ctacatcagattgatccgaagactaggaaacctatgaaaaagaaagttctctttgtaaaa
aatggtgcagttattttgtgccgcatccaggtcaataacttgatctgcattgagaagttc
tctgattttcctcagcttggaagatttacacttcggactgaagggaagacagttgccgta
ggaaaggtcactgatattccggctgcaaccaattaa
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