Cucurbita pepo subsp. pepo (vegetable marrow): 111801957
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Entry
111801957 CDS
T05351
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111801957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111801957
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111801957
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111801957
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111801957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111801957
NCBI-ProteinID:
XP_023541976
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Position
LG09:complement(6703621..6711326)
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AA seq
706 aa
AA seq
DB search
MEDSEGGLSFDFEGGLDAGPTNPAAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTADA
SGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGTSN
KFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAPIQ
TASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDS
ADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSF
QKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREEEK
AKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPPHM
PMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGEFM
NPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPVGPPLYPP
PAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKAYPD
EQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaggattcggagggtggtctcagcttcgatttcgagggcggtcttgatgccggtccc
accaaccccgccgccgcctccttgcccctcatccactctgactcttctgctcctcctgcc
gcctccgccgtctccaactctggcgccggtgccggcggtcctcctgttactgctgacgct
tctggcgccgcaactggcaacgttggcagccggaggagcttccggcagacggtttgtcgg
cattggctccgcagcctgtgtatgaagggcgacgcttgtggcttccttcaccagtatgat
aaatctcggatgcccatttgccgattcttccgtctctatggcgagtgccgtgaacaggat
tgcgtgtataaacataccaacgaagatatcaaggagtgtaatatgtacaagtttggtttc
tgtccaaatggtcctgattgtcggtataggcatgctaagttgccgggacctccacctccg
gtggaagaaatccttcagaaaattcagcatttgggtccatacaattatggcacctcgaac
aaattcttttcacaacgtggagttggcttatctcaacagaacgaaaaatctcagtttcct
ccgggtccagccaccgttactcaaggagtgataggaaaaccttctgtagcagaatctgct
aatgttcaacaacagcaagcccaacagtctgcacaacaaaccagccaggctccaatacaa
actgcttctaatggtcaggtcaatcaattaaacagaaattcaacgtctttgcctcccgga
atatctaggtactttattgttaaaagttgcaaccgtgagaatttggaattatctgtacaa
caaggggtatgggcaactcaaagaagcaatgaagctaaacttaatgaagcttttgattct
gctgataatgttattttgattttctcagtcaatcggactcggcattttcagggttgtgca
aagatgatgactaggattggtggatctgtcagcgggggcaattggaagtatgcacatgga
actgcgcattacgggcaaaacttttcactcaaatggctgaagttatgtgaactatccttc
cagaaaactcgccatttgagaaatccttataatgaaaacttaccagtaaagattagtaga
gattgccaagagctagaaccttctattggtgagcagctggcttctttgctttatcttgag
cccgatggtgacctcatggctgtctcgatagcagcggaatcaaaacgagaagaggagaaa
gcaaagggagttaatcctgatatcagaaatgagaatccagatatcgtcccgtttgaggat
aacgaagaagaggaagaagaagaaagcgaagaggaggaggaggagagctttggccagtcc
gttggtccaccagctcagggcagaggaaggggccggggaatgatgtggcctccacacatg
ccgatggggcgtggtgcgaggcctttccatggaatgcaaggttttccacctgggatgatg
ggtccagatgggatgtcatatggacctgttacacctgatgggtttcccatgcctgacatt
ttcggtatggctcctcgtggtttcaatccgtacggtgctagattttccggtgagtttatg
aatccccagtctgctatgatgtttcgtggacgaccttctcaacctggcgccatgtttcct
cctggtgggtttgggatgatgatgggtcaaggacgtggtccctttatgggtgggatgggg
gttactggtactaacccagctcgagctggtcggcctgtaggacctccattgtatccacct
cctgcagtaccttcatctcagaacatgaaccgagctatgaagagggatcaaaggggacca
ggtagtgataggaatgatagatatattgcaggttcagaccaaaacagaggccaggagata
ccgggtagcggacacgacgacgaaatgcaatataaacaaggatcaaaagcttatcctgat
gagcaatatgggatgggaaccgccattaggaacgaagagagcgaaagtgaggacgaggca
cctcgacgatcaaggcacggagaggggaagaagaagcggagaggctcagaaggagatgcc
actgcaatctctgatcagtga
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integrated database retrieval system
