Cucurbita pepo subsp. pepo (vegetable marrow): 111802228
Help
Entry
111802228 CDS
T05351
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111802228
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111802228
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Complex C specific factors
111802228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
SRP54
nSTAND3
AAA_11
T2SSE
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
111802228
NCBI-ProteinID:
XP_023542287
LinkDB
All DBs
Position
LG09:complement(7571522..7581353)
Genome browser
AA seq
708 aa
AA seq
DB search
MAQFWKPGAEKPRLLDDGEGGVLFFSSSYSSSSGFGFSSIEKQRQRLPVYKYRSAILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLTNPDVTRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDM
LLGLLKKIQRRRPDLRLIISSATIEAKTMSTFFQTSKRRRGLEGEALEPKVEPAILSVEG
RGFNVQIFYLEEPVSNYVQSAVSTVLSIHEQEPPGDILVFLTGQDDIDTAVQLLTENDRN
DRKKSELIVLPLYSGLSRAEQELIFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS
KQRFYNPISDIENLIITPISKASARQRTGRAGRIRPGKCYRLYTEEYFINEMPAEGIPEM
QRSNLVTCVIQLKALGIDNILGFDWPSPPSPEVMIRSLEVLYSLGVLDDDAKLTSPVGFQ
VAEIPLEPMISKMILASGDLGCSEEIITIAAVLSIQSIWASSRGAQKELDEARLQFAAAE
GDHVTFLNVYKGFLQSNKSSQWCHKNFINYQAMCIPRLSPTQNRGSKKVMEVREQLRRIA
QRLGIVLKSCERDTTVIRKAVTAGFFANACQLEAYSHNGMYKSIRGSQEVYIHPSSVLFR
VNPKWVIYHSLVSTDRQYMRNIITIDPGWLTEAAPHFYQFRQLTHMPH
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctggaaaccgggcgccgagaagccccgtctgctcgacgacggagagggc
ggcgttctgttcttttcttcttcttactcttcttcatctggatttgggttttcgagcatt
gaaaagcagcggcagaggcttcctgtttataaatatcgctccgccattctgtatttagtg
gaaactcatgccactactatcattgttggcgagacgggtagcggcaaaaccactcaaatt
cctcagtacctcaaagaagcaggttgggctgatggtggtcgagtaattgcctgcacccaa
ccaagacgactggctgttcaggcagttgcttctagggtggctgaagagatgggtgttaag
cttggtgaagaagttggttatacaattcgatttgaagatcttacaaacccagatgtgacg
agggtgaaatttctgacagatggtgtgttactcagagagatgatggacgatccacttttg
actaagtatagtgtaataatggtggatgaagcacatgaaaggtctatctcgactgacatg
ttacttggtctcttgaaaaagatccaacgtcggcgaccagatctacgattgattatctct
tctgctacaattgaggctaaaacgatgtcaactttcttccaaaccagcaaaagacgtcga
ggacttgaaggtgaggcgcttgaaccaaaggtggaacctgctatcctatcagtcgaggga
agagggtttaatgtacaaatcttttaccttgaggagcctgtttcaaactatgtccagtct
gccgtttcaactgtattgtcaattcatgaacaggaacctccaggtgatatacttgtattt
ctcactggccaagatgatattgatactgctgttcaattgcttacagaaaatgaccgaaat
gatagaaaaaagtcagaattgatcgtcttgcctctgtactctgggctttcacgtgcagag
caggagctcatcttctcaccgacacccagggggaagaggaaagtagtgatttccacaaat
atagcagagacctcattaactctagagggcatcgtctatgttgttgacagtgggttctcc
aagcagcggttctacaatccaatatcagatattgaaaaccttattattacaccaatatct
aaggcctcagctagacaaaggactggtcgggctggaagaattcggccagggaagtgttac
agactgtatacagaagagtatttcatcaatgaaatgcctgctgagggtattcctgaaatg
caaagatcaaatcttgttacctgtgtcattcagttgaaagccttgggaattgataatatt
ctaggctttgattggccatcacctccatctcctgaagtaatgattcggtcattagaagtt
ctttattcacttggagtcttggatgatgatgcaaagcttacttcgccagttgggtttcaa
gttgctgaaattccacttgagccaatgatctcaaaaatgatcttagcttctggtgacctt
gggtgctcggaggagatcattacaattgctgctgttctgtcaatccagtctatttgggct
tctagtaggggagcacagaaggaacttgatgaagcaaggttgcaatttgctgcagctgag
ggcgatcatgtgacctttcttaatgtgtacaaaggatttcttcagtctaataaatcttca
cagtggtgtcacaagaattttatcaattaccaagctatgtgtattccccgactatcccca
acccaaaatagagggagcaaaaaagtaatggaagttagagaacaactgagaagaatagca
cagagattaggcatcgtcttgaaatcatgtgaaagagatactacggttatacgcaaggca
gttactgctggatttttcgccaatgcgtgtcaattagaggcatacagtcacaatgggatg
tacaagagtatcagaggttctcaagaagtttatattcatccctcttcagtgttattcaga
gttaatccaaagtgggtgatatatcattcgcttgtgtcgactgaccgacaatatatgcgt
aatatcatcaccattgatccgggatggttaaccgaggctgctccccatttttaccagttc
aggcagctcactcatatgcctcactga
DBGET
integrated database retrieval system