KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111802228
Entry
111802228         CDS       T05351                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpep03041]
    111802228
Enzymes [BR:cpep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     111802228
Spliceosome [BR:cpep03041]
 Complex C
  Other components
   Complex C specific factors
    111802228
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C AAA_22 DEAD HA2_N AAA_19 AAA_30 ResIII AAA_7 SRP54 nSTAND3 AAA_11 T2SSE AAA_23 AAA_29
Other DBs
NCBI-GeneID: 111802228
NCBI-ProteinID: XP_023542287
LinkDB
Position
LG09:complement(7571522..7581353)
AA seq 708 aa
MAQFWKPGAEKPRLLDDGEGGVLFFSSSYSSSSGFGFSSIEKQRQRLPVYKYRSAILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLTNPDVTRVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDM
LLGLLKKIQRRRPDLRLIISSATIEAKTMSTFFQTSKRRRGLEGEALEPKVEPAILSVEG
RGFNVQIFYLEEPVSNYVQSAVSTVLSIHEQEPPGDILVFLTGQDDIDTAVQLLTENDRN
DRKKSELIVLPLYSGLSRAEQELIFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS
KQRFYNPISDIENLIITPISKASARQRTGRAGRIRPGKCYRLYTEEYFINEMPAEGIPEM
QRSNLVTCVIQLKALGIDNILGFDWPSPPSPEVMIRSLEVLYSLGVLDDDAKLTSPVGFQ
VAEIPLEPMISKMILASGDLGCSEEIITIAAVLSIQSIWASSRGAQKELDEARLQFAAAE
GDHVTFLNVYKGFLQSNKSSQWCHKNFINYQAMCIPRLSPTQNRGSKKVMEVREQLRRIA
QRLGIVLKSCERDTTVIRKAVTAGFFANACQLEAYSHNGMYKSIRGSQEVYIHPSSVLFR
VNPKWVIYHSLVSTDRQYMRNIITIDPGWLTEAAPHFYQFRQLTHMPH
NT seq 2127 nt   +upstreamnt  +downstreamnt
atggcgcaattctggaaaccgggcgccgagaagccccgtctgctcgacgacggagagggc
ggcgttctgttcttttcttcttcttactcttcttcatctggatttgggttttcgagcatt
gaaaagcagcggcagaggcttcctgtttataaatatcgctccgccattctgtatttagtg
gaaactcatgccactactatcattgttggcgagacgggtagcggcaaaaccactcaaatt
cctcagtacctcaaagaagcaggttgggctgatggtggtcgagtaattgcctgcacccaa
ccaagacgactggctgttcaggcagttgcttctagggtggctgaagagatgggtgttaag
cttggtgaagaagttggttatacaattcgatttgaagatcttacaaacccagatgtgacg
agggtgaaatttctgacagatggtgtgttactcagagagatgatggacgatccacttttg
actaagtatagtgtaataatggtggatgaagcacatgaaaggtctatctcgactgacatg
ttacttggtctcttgaaaaagatccaacgtcggcgaccagatctacgattgattatctct
tctgctacaattgaggctaaaacgatgtcaactttcttccaaaccagcaaaagacgtcga
ggacttgaaggtgaggcgcttgaaccaaaggtggaacctgctatcctatcagtcgaggga
agagggtttaatgtacaaatcttttaccttgaggagcctgtttcaaactatgtccagtct
gccgtttcaactgtattgtcaattcatgaacaggaacctccaggtgatatacttgtattt
ctcactggccaagatgatattgatactgctgttcaattgcttacagaaaatgaccgaaat
gatagaaaaaagtcagaattgatcgtcttgcctctgtactctgggctttcacgtgcagag
caggagctcatcttctcaccgacacccagggggaagaggaaagtagtgatttccacaaat
atagcagagacctcattaactctagagggcatcgtctatgttgttgacagtgggttctcc
aagcagcggttctacaatccaatatcagatattgaaaaccttattattacaccaatatct
aaggcctcagctagacaaaggactggtcgggctggaagaattcggccagggaagtgttac
agactgtatacagaagagtatttcatcaatgaaatgcctgctgagggtattcctgaaatg
caaagatcaaatcttgttacctgtgtcattcagttgaaagccttgggaattgataatatt
ctaggctttgattggccatcacctccatctcctgaagtaatgattcggtcattagaagtt
ctttattcacttggagtcttggatgatgatgcaaagcttacttcgccagttgggtttcaa
gttgctgaaattccacttgagccaatgatctcaaaaatgatcttagcttctggtgacctt
gggtgctcggaggagatcattacaattgctgctgttctgtcaatccagtctatttgggct
tctagtaggggagcacagaaggaacttgatgaagcaaggttgcaatttgctgcagctgag
ggcgatcatgtgacctttcttaatgtgtacaaaggatttcttcagtctaataaatcttca
cagtggtgtcacaagaattttatcaattaccaagctatgtgtattccccgactatcccca
acccaaaatagagggagcaaaaaagtaatggaagttagagaacaactgagaagaatagca
cagagattaggcatcgtcttgaaatcatgtgaaagagatactacggttatacgcaaggca
gttactgctggatttttcgccaatgcgtgtcaattagaggcatacagtcacaatgggatg
tacaagagtatcagaggttctcaagaagtttatattcatccctcttcagtgttattcaga
gttaatccaaagtgggtgatatatcattcgcttgtgtcgactgaccgacaatatatgcgt
aatatcatcaccattgatccgggatggttaaccgaggctgctccccatttttaccagttc
aggcagctcactcatatgcctcactga

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