Cucurbita pepo subsp. pepo (vegetable marrow): 111802273
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Entry
111802273 CDS
T05351
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111802273
09122 Translation
03013 Nucleocytoplasmic transport
111802273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111802273
03041 Spliceosome [BR:
cpep03041
]
111802273
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111802273
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111802273
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111802273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
111802273
NCBI-ProteinID:
XP_023542342
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Position
LG09:3000018..3013551
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AA seq
608 aa
AA seq
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MEEFRKAILQTGPPENFALQTVQDVIKPQKLTKLAQDENQLLENILRRLLQELVSSAAQS
AEPIMQYGMSIDDNETSQGHIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTLRNCKD
IFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKASDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEPPDGFSIDFNFYKTFWSLQEYFCNPASLTLASTKWQKFT
SSLTVVLNTFDAQPLSDEEGDANMLEEESATFSIKYLTSSKLMGLELKDPSFRRHVLVQC
LILFDYLKAPGKNEKDVPSETLREEIKSCEERVKKLLEVTPPRGKEFLQKIEHILERENN
WVWWKRDGCPPFEKQPIEKKTTHDATKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRV
RTPAISEYWKPLAEDMDESAGIEAEYHHKSNRVYCWKGLRFSARQDLEGFSRFTDHGIEG
VVPLELLPPDVRSKYQAKPNERSKRAKKEETKGAMRQAEENQMATPASENDGEGTRSDPD
GPSVAMDADTTVAAGSVSQGGTPTPEENKQSSDTDIGQEAGQLEADAEVEPGMIDGETDA
EVDLDTAG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaagagttccggaaggccatattacaaacggggccaccagaaaattttgctctgcag
acagttcaagatgttatcaaacctcagaagctcacaaaattggcacaagatgaaaatcag
ttgctggagaatattctaaggcgattacttcaagaattggtgtcatctgcagctcagtca
gcggagccaataatgcagtatgggatgtctattgatgacaatgaaacttctcagggtcat
attccacgtcttctagacattgttctgtatctttgtgagaaagagcatgtcgaaggaggt
atgatattccagctgttggaggatctgactgaaatgtcaacattgaggaactgcaaagat
atttttggttacattgagagtaaacaagatatattgggaaagcaagagctttttgctcgt
ggaaaacttgtcatgttgagaacgtgcaatcaattgcttcgccgtctatcaaaggcaagt
gatgtggtgttttgtggacgcattctgatgtttctagcacattttttccctttatctgaa
cgttctgctgtgaatataaaaggagtgttcaacacctccaatgaaacaaaatatgagaaa
gaacccccagatggcttttctattgatttcaacttttacaagaccttttggagtttacag
gaatacttctgtaatcctgcctcccttactcttgcttcaacaaagtggcaaaagttcaca
tcgagtttaacggttgtgttgaatacctttgacgcacaacctttgtctgatgaagaggga
gatgctaacatgttggaggaggagtcagcaaccttcagcataaaatatcttactagtagt
aaactgatgggtttagaattaaaggatccaagttttcgacgccacgttcttgtgcagtgc
cttatattgtttgattatctaaaggccccaggaaagaatgagaaagatgttccatctgaa
accctgagagaagaaattaaatcttgtgaggagcgtgtgaagaagttgcttgaggtgaca
ccgccaagaggaaaagaatttcttcagaagattgagcatatattagaacgtgaaaataat
tgggtgtggtggaaacgtgatggttgccctccttttgaaaagcaaccaattgaaaagaaa
accacccatgatgcaactaaaaaacgtaggccaaggtggagattagggaataaagaactc
tctcaattgtggaagtgggctgatcagaatccgaatgctttgactgatcctcaacgtgtc
cgcactcctgcaatttctgagtattggaaacccttggcagaggatatggacgagtctgct
ggaattgaagcggaataccatcataaaagtaaccgagtttattgctggaaaggccttcga
ttttcagctcggcaggacttggaaggattttctcgattcaccgaccatggcattgaagga
gtcgtgcctttggaactcctgccacctgatgtacgatccaaataccaagctaaaccaaat
gagagatctaaacgtgctaagaaggaagaaacgaaaggggccatgcgtcaagctgaagaa
aatcagatggcaacaccagctagtgagaatgatggtgaaggaaccagaagtgaccctgat
ggaccatcagtggcgatggatgccgatacaaccgttgctgctggcagtgtatctcaaggc
ggtactccaactccagaagaaaataaacaaagctccgacaccgatattggtcaagaggca
gggcagttggaagccgatgccgaggtagagccgggtatgattgatggcgagacagatgca
gaggttgatttggatactgcaggttga
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