Cucurbita pepo subsp. pepo (vegetable marrow): 111802475
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Entry
111802475 CDS
T05351
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111802475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111802475
03041 Spliceosome [BR:
cpep03041
]
111802475
03036 Chromosome and associated proteins [BR:
cpep03036
]
111802475
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111802475
Spliceosome [BR:
cpep03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111802475
Complex B
111802475
Complex C
U2 SnRNP specific factors
111802475
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111802475
TFTC complex
111802475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111802475
NCBI-ProteinID:
XP_023542630
LinkDB
All DBs
Position
LG01:6589221..6594046
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQRATGIVFAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA
IRSLAQFRLTGALKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQFL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDATGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLEHNNDSVKELKIKYFDTIAVTASMCVLKSGFLFAASEFGNHSLYQFQSI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKIVNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTSGKR
TIVKVGSNRLQVVIALSGGELIYFEMDMTGQLIEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFLEVLASVGGEDGADHPASLFL
NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVVLRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGSFLRVFTIERLGETFNETVIPLRYTP
RKFVLHPRRKLLVVIESDQGAFTAEEREAARKECFEAAGAGENGHGSMEQMENGGDDEDK
DDPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDSEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAG
IGSVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWITASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIIQFHIGDMVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPTLPLDMQRKIADELDRTPG
EILKKLEEVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctatataacctcactttgcaacgagctaccgggattgtttttgctataaatggg
aatttctccggtgggaagacgcaggagatagttgtggccagagggaaggtcctggatctc
attcgtccagatgatagtggtaagatccaaactcttctttctgttgaaatctttggtgct
attcggtctttagctcaatttaggcttactggggctctcaaagattatattgttgttggg
tctgattcgggtcgaattgtcattctggagtacaataaggataaaaatgtgtttgacaag
atacatcaggagacttttgggaagtctggttgtcgccggattgttccggggcagtttttg
gctgttgatccaaaaggaagggctgttatgattggggcatgtgagaagcagaagcttgtt
tacgttttgaacagagatacagcagcgaggcttactatttcttcgccattggaggctcac
aagtcgcatacgatagtctattcaatttgtggagttgattgtggatttgacaatccaata
tttgctgctattgagttggattactcggaggcagatcaggatgctacgggggtggcagca
agcgaggcccagaagcatttgacattttatgaacttgatctcggtctcaatcacgtctct
aggaagtggtcagaacctgttgataatggtgctaatatgcttgttactgtccctggaggt
ggggatggtcctagtggagtgttagtctgtgctgaaaattttgtgatttataagaatcag
ggacatccagatgtgagagcagtcattcctagacgtgcagacttacctgctgaacgtggt
gtgcttatagtttcagcagcaatgcataagcaaaaaacaatgtttttctttcttttacag
acagagtatggagatatatttaaggttaccttggaacacaacaatgacagtgtcaaagaa
ctgaagatcaagtattttgatacaattgcagttacagcttcaatgtgtgtactgaaatca
ggatttctatttgctgcctcagaatttggaaatcactcactataccagtttcaatccata
ggggatgatgctgatgttgagtcttcatcggctactctgatggaaacagaagaaggtttt
cagcctgtcttttttcagcctaggagacttaaaaatcttgttaggattgatcaagttgag
agcttaatgcctataatggacatgaaaattgttaatctttttgaggaggaaacaccccag
atatttactctctgtgggcgtggtcctcgatcatctttgcgaatattgagacctggtttg
gccatcagtgaaatggctgtgtcagagcttcctggtgttcctagtgctgtttggactgtg
aaaaagaacatcaatgatgagtttgatgcatacattgttgtgtcgtttgctaatgcaacg
cttgttctttctattggtgagacagttgaagaagttagtgatagtgggtttcttgacacg
accccttcccttgctgtttctttgataggcgatgattctctcatgcaagtccatcctaac
ggtattaggcatattagggaagatgggcgtattaatgaatggagaacttcgggcaagagg
accattgttaaggttggttctaataggcttcaagtggtgattgccctgagtgggggtgag
cttatttattttgagatggacatgactggtcagttaatagaggtggagaagcatgaaatg
tctggagatgtggcttgcttggacattgcccctgtacctgaaggaagacagcgttcacgt
ttcctagcagttggttcttatgacaacacgatacgaattctatcattggatcctgatgac
tgtatgcagattttaagtgtgcaaagtgtttctgcagctccagaatctctcctatttctt
gaagtgttggcatcagtaggtggggaggatggtgcagatcatcctgctagccttttccta
aatgctgcattgcattctggggttttattcagaacagtagtggatatggtgacaggccag
ctttctgattcccgatcccggttcttaggactaagagcaccgaaactattttctgttgtt
ttgagggggaggcgtgcaattctttgcctctcaagtagaccttggcttggatatattcat
caagggcattttctattgacgccactatcatatgaaactcttgaatatgcctcctcattt
tcatcggatcagtgtgcagaaggtgtagttgctgtggctggcagtttcttgagggttttt
accatcgagagattgggagaaacatttaacgaaacagtcattcctcttaggtacacccca
agaaaatttgtgcttcatcctaggagaaaacttttggttgttattgagagtgatcaggga
gcattcactgcagaagagcgagaagctgctagaaaagaatgctttgaggctgcaggggct
ggggaaaatggacatggctcaatggagcaaatggagaatggtggagatgatgaggataag
gacgatcctttatctgatgagcattatggttacccaaaggcagagtctgaaaaatgggtt
tcttgcatccgagttctcgatcctaggtcagccacgacaacttgtctgctggagcttcag
gacagtgaagcggcattcagcgtttgtaccgtgaatttccacgacaaggaatatggaacc
cttttagctgttggcactgcaaaggggctgcagtttttcccaaaacggagtttagttgct
ggatatattcatatttatcgttttctggaggatggaaaatcccttgagcttttgcacaag
acacaagtggaaggtgttcctctcgctttagctcagttccaaggaagattacttgcagga
ataggatccgtgctcagattgtatgatttggggaaaagaagattgcttaggaaatgtgaa
aataagttgttcccgaatacaattgtgtctattcagacataccgtgatcgaatttatgtt
ggcgacattcaggagtccttccattattgcaagtataggcgggatgaaaatcaactatac
atatttgctgatgattctgttcctagatggattacggcatcatatcatgtggattttgac
accatggctggtgctgataagtttggaaatatctattttgtgcggttaccacaagatgtc
tcagatgagattgaagaagatccaacaggtggaaagataaaatgggagcagggaaagctt
aatggagctcctaacaaagttgaggagatcatacaatttcacatcggtgacatggtcacg
tcgctgcaaaaggcgtctttgattccagggggtggagaatgcattttgtacggtacagtg
atgggaagcttgggggcattgcacgctttcacctcccgtgatgatgttgatttcttctct
cacttggagatgcatatgaggcaggagcatccacctttatgtggaagagatcatatgggt
tatagatcagcttattttcctgttaaggatgtgattgatggggatctgtgcgagcagttc
ccaacccttcctctggatatgcagagaaagattgctgacgaactggaccgtactccagga
gagatactgaaaaaactcgaagaagtacgaaacaagattatttga
DBGET
integrated database retrieval system
