KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111802500
Entry
111802500         CDS       T05351                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cpep03009]
    111802500
Ribosome biogenesis [BR:cpep03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    111802500
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 Beta-prop_EML Beta-prop_EML_2 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_IP5PC_F ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_LRRK2 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_WDR11_2nd WDR90_beta-prop_4th VPS8_N
Other DBs
NCBI-GeneID: 111802500
NCBI-ProteinID: XP_023542664
LinkDB
Position
LG09:8632536..8636499
AA seq 461 aa
MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR
KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGK
LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGTAQPMLYCLIEH
KSPLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHLEGITEIVLHPTEQFLF
SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW
DIDSQRIIQKLDHKKGRITNLVAFPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLF
PSSRPLGENPNLVGFTSASSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVME
MNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFN
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgagcaatgttggcgaaacaatggcgttggctgtgtgcagcgacaagaacatgggatca
gggattacgatttgggatccaaaaacaggcgaaactctccttcatattccgacttgcgct
tcgccttcttatggtttaatttctttgagaaacgagttccttgttgcttctcagactcgt
aaggaaggctccgttggtggtggatccatgttcgtttggtccctgagcaagcctcagtcc
cctcttaggagctatccattggagcctattggaccacttgcttcaacaaaggacggtgta
tatcttgcaggcggagctcattccggtaatattcatctctgggaggttggtagtggtaaa
ttgcttaagctttggagtgggcatcataagcccataaaattcatcctgttttcttgggac
gattcgtttctcattactggttcggccgatggaatgatttgtgtctggtccatgattagt
ttgctggatgtggaacttgtgggaactgcacagccaatgttatactgtctcatagaacat
aagtcgcctttaactggtctaattactatgtctggctactcgatgtcgatgatcatttca
agctccctcgatggcagtttaaagttttgggatttaatgtcgggaatgattcggggaact
caaggtcatttagagggaatcactgagattgttcttcatccaactgagcaatttctgttc
tctgggactgttgatgggaaaatttttgctagcaggcttgaatttggattggataactgc
attaccattaaagaaagtcaattatttgcatcaacaggacacaagggagctattactgct
ctggccttcagtcaaatggatctagtttctgcatccgaggattgcacagtctgcatatgg
gacatcgatagtcagaggatcattcaaaagcttgaccacaagaaagggagaataaccaac
ttggtagcatttccacggtcgtcgctgctgatctctacgtcaaaccgtaagagagtcttg
aaacagttcgacaagtatccccagccagccaacttgtcgacgagcacaatacctctcttt
ccctcttcccgacccctcggggagaatccaaatctcgtcggattcacaagtgccagttca
ctgaatcagcaaatatttgatatgaagacagaagggacatcagcagcaatacagatgaaa
gtcgatacacgtttacaaagccgaatgtgggcgtctagaatgacgaagcaagttatggag
atgaacaaccatcttcaatcacagttgcttgacatgatgcagactcgtttgttcccgaag
aaacgaaaagatcaaagagatcgagtcgctcggactagggagaagcatccattgtcattc
aattga

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