Cucurbita pepo subsp. pepo (vegetable marrow): 111802863
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Entry
111802863 CDS
T05351
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111802863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111802863
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111802863
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
111802863
NCBI-ProteinID:
XP_023543030
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All DBs
Position
LG01:592862..599514
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AA seq
1255 aa
AA seq
DB search
MVKRRLYEFKHPFNDYPFEAMCCGSWQAAEKIRIRNGSITLHLVNDQFMILERGPYTDFR
IRSRQATSSDCTCFLRPGVDICVLSSSHSTENTDVQGSEPVWIDAKISSIERKPHDSGCS
CQFYVQLYAADKKPLGSEKGSLCKEIIAMGIDQIFVLQKVRKHFCEDQHYRWDFSEDCAL
LPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSVDNKILYQVLESNQKGTSIASDKILYV
VNFRNDDGMFIPIIHQLNSSDRIEMSPADDAFDSQLHSFTDLMDLRRSKRRNVQPDRFLG
CDSINESEIDYSGTRIYKTEQLNDDDEMTLPLAYLFATNAGPSKVKTENESNNHFNQLSV
HDDLSDFKSRLRSLEMSDEVEDKNQLAIVPVIDEQPIASDPYPDDANGCGNFTKQITEIS
ARYYYINNKRKVRKRNFSDFEDENFENGSWGKASSSKGRKTRYHSICYKEDGSPKERTWQ
KRSLGAGAYKDLINSFLKNIDSTIQKEEPQIIDQWKEFKNKTSLDKRNEMELPSNEEKEE
NSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKVSKWCQHEFKLNEEIGMLCHIC
GFVSTEIKDVSAPFMQHMSWNSEERRIEEKDEHNTDDEEEMNIFCGLPSSDGTLSEENDN
VWALIPEFRRKLHLHQKKAFEFLWKNVAGSMVPALMDQASRKIGGCVISHTPGAGKTFLI
ISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRSNSKPV
TFAGGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLR
QSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPRFV
NEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDGEERQEGLNMLRNMTSAF
IDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAKYPGYPLELELLITLGSIHP
WLVKTAVCASKFFSERDLMELEGYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPV
KLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPLGPSKVLLASITACAEGIS
LTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKHKRTTWKEWV
SSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIREKD
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaagacgtttatatgaattcaagcatccattcaatgattaccctttcgaggcg
atgtgctgtggttcttggcaagctgcggagaagataagaattaggaatggttcaatcacc
cttcatttagtgaatgatcagttcatgattctggaaagaggtccttacacagacttccgc
attaggtcgagacaagcgacttcgtctgactgcacctgttttctacgacctggtgttgat
atttgtgtcctctcttcctctcacagcacggaaaatactgatgtgcaaggttcagagcct
gtgtggatcgatgctaaaataagctcaattgagcggaagcctcatgattctgggtgttca
tgccagttttatgtccaattatatgctgctgataaaaaaccccttggttcagagaaggga
tcgctttgtaaagaaatcatagcaatgggaattgatcagatctttgtactccaaaaggtt
aggaaacacttctgtgaagatcaacactaccgatgggatttctctgaggactgcgcactg
ttgccaaaaacaaaactgcttctgggaaaatttctgtccgatctttcttggttagtagta
acatcagcattgaaacatgtcacttttgacgtaagatcagtggataacaagatcttgtac
caagtgttggaaagtaatcagaagggcacttcaatagcttctgacaagattttatacgtt
gtaaactttagaaatgatgatggtatgtttattccaataatacatcagctaaattcatct
gataggattgagatgtctcctgcagatgatgcatttgacagtcaattgcactcattcacc
gatcttatggacttgaggcgttcaaaacgccgtaatgtccaacctgatcgttttcttggc
tgtgatagtatcaatgaatcagaaattgactacagcggaaccaggatatataaaacagag
caattgaatgatgatgatgagatgacattaccacttgcttacctgtttgccacgaatgca
ggtccttcaaaagtaaagacggaaaatgaaagcaacaatcatttcaatcaattgagtgta
catgatgatctctctgatttcaagagcagactaagatcattggaaatgagtgatgaagta
gaagataaaaatcaacttgctatagttcctgtaattgatgaacagccaatagcatctgat
ccatatcctgatgatgccaatggttgtggtaactttacgaaacagataactgaaatttca
gctaggtattactacattaacaataaacgcaaagtccggaaaagaaacttttcagacttt
gaagacgagaactttgagaatggtagctggggaaaggcttcgagcagtaaaggtaggaag
accaggtatcattccatatgttataaagaggatggttctcccaaagaaagaacttggcag
aaacggtccttaggtgcaggtgcatacaaggatttgatcaattccttcctgaagaatatt
gactcaacaattcaaaaagaagagccacagataattgatcaatggaaagaatttaagaac
aaaacttccttggataagaggaacgagatggaactgccctctaatgaggagaaggaagaa
aactctgagattgaaatgctgtggagagagatggaaatatcccttgcctcaagttacctt
attgatgctaaccagggttttagtaatggaacatcagtggagcctgaacagaaagtaagc
aaatggtgccagcatgagttcaagttgaatgaagagatagggatgctctgccatatatgt
ggctttgtgagcactgaaattaaagatgtctcagcaccatttatgcaacacatgagctgg
aattccgaagagcggaggattgaagaaaaagatgagcacaatactgacgatgaggaggag
atgaatattttctgtggcctgccttcttctgatggtaccttatcggaagaaaatgacaat
gtctgggccttgatccctgaattcagaaggaaattacatctccaccaaaagaaagcattc
gagttcctgtggaaaaatgttgctggttctatggttccagctctcatggatcaagcatct
cgtaaaataggtggttgtgtgatatcccatacaccaggagctggaaaaacctttctgatc
atctcattcctcgttagttacttgaaactgtttccagggaaaaggccccttgtccttgct
ccaaagacaactctttatacatggtataaggaatttattaagtgggaagttccagtacca
attcatctaatacatggtcgtagaacgtaccgagttttccggtcgaactcaaaaccagtc
acatttgctggaggtccaaggccgacagatgatgtcatgcacatcttggattgcctggaa
aagataaagaagtggcatgcacatccaagtgttcttgttatgggctatacatcatttctt
acattaatgagggaagatgcaaaatttgctcacagaaagtacatggccaaagttttgcgc
caaagccccggtatcttaatattggatgaggggcataaccccaggagtactaagtccagg
ctgaggaaggttttgatgaaagttgaaacagacctcagaatactcctctcaggtaccttg
tttcaaaataatttctgtgaatatttcaatactctttgtttggcaagacctaggtttgtg
aatgaagtgttgaagaaactagatcccaaattcaagaggaagaaaagaaaagctccacac
ttgcaagaagctcgggcaaggaaattctttttagataagatagctcggaaaatcgatgca
ggtgatggagaagagaggcaggaaggtctgaacatgctaagaaatatgacaagtgcgttt
attgatgtttatgaaggtggaagtaaggatggccttcctggtttacaaatttacacctta
ctaatgaacacaactgacatacagcaacaaattttgaataaacttcataagataatggct
aaataccctggatatccccttgagttagagctcctcataactctcggttcaatccatcct
tggttagtaaaaactgcggtttgtgctagcaaatttttcagtgagagggatctgatggaa
ctagaaggatacaaattcgatttgaggaaaggttcaaaggtgatgtttgttctgaatctt
gtgtaccgtgtcgtcaagaaggaaaaaattctaatcttctgccacaacattgcacctgtc
aaactattcatagagctgtttgagaacgtatttaggtggaagagaggccgagaaatcttg
gccctcacaggggaccttgagctattcgaacgaggaaaagtgatggataagtttgaagat
cccttagggccatccaaagtcttgcttgcttcaattactgcttgcgcagaaggcattagt
ttgactgcagcttcacgagtcatcttactagactccgagtggaatccttcgaagacaaag
caggccatcgctcgagcattccgtccaggccagcttaaggtggtctatgtctatcaacta
ctggtaactggcacattggaagaggacaagcacaagagaactacatggaaggaatgggtg
tcaagtatgattttcagtgaggcgtttgtggaggatccttctaaatggcaagcagaaaag
attgaagatgaagttcttagggagatggtggaggaagatagagtcaaatcgtttcatatg
attatgaaaaacgagaaggcttctactgtgatcagagaaaaggattag
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