Cucurbita pepo subsp. pepo (vegetable marrow): 111803135
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Entry
111803135 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111803135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111803135
03012 Translation factors [BR:
cpep03012
]
111803135
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111803135
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111803135
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111803135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
T2SSE
AAA_16
PhoH
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111803135
NCBI-ProteinID:
XP_023543190
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All DBs
Position
LG01:7837607..7849104
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AA seq
1144 aa
AA seq
DB search
MHNFKRLPNVLLVLSKNINCDLSNKYGLAVRPLKLLLQSHSYSVSRVWRGSYHYAAEQFS
DDEYECDVENNTASSSVANIDEWKWKLSLLSRNEKDQEIISRDNRDKRDFEQISNLAKKM
GLYCSMYGKVVVASKVPLPNYRPDLDDKRPQREVAIPLSLQRRVEGLLQEHCDRIRLSSA
KANEISNDAKSIDEVKDVNTDEYGNSYLDESVMEKVLQRRSLRMRNMQRAWQESPEGRKI
LDFRRSLPAFKEKERLLQAIAQNQVVVISGETGCGKTTQLPQYLLESEIETGRGAFCSII
CTQPRRISAMAVSERVSIERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDR
NLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSSYFGGAPT
IHIPGFTFPVRAYFLEDVLEVTGYKLTSFNQIDDYGQEKTWKTQKQLVPRKRKNQITTLV
EDALDKSTLGNYSSNTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGAVLVFLTGWEDIS
SLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKAPQNVRKVVLATNMAEASITIN
DVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGKCYHLYPKCVFE
AFSEYQLPELLRTPLNSLCLQIKSLQVPSVGEFLSSALQPPEPLAVQNAIGFLKMIGAFD
EKENLSNLGKFLSMLPVDPKLGKMLVMGAIFHCFDPILTIVSGLSVRDPFLLPQDKKDLA
GTAKARFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQAIDSLRRQFSF
ILKDAGIVDLDGSTSNKLSHNQSLVRAIICSGLFPGVASVVHRETSMSFKTMDDGQVLLY
ANSVNARYDTIPFPWLVFGEKVKVNTVFLRDSTGISDSMLILFGGAVKCGVQAGHLKMLN
GYIEFFMDSSLAECYLQLKEELDKLIENKLQNPGLDILKEGKYLVLSVQELVSGDQCEGR
FVFGRESRKQVSTDDKFTRDGSNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRALVEFKG
MQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNTNSDDDSPIDVTDNMLKLLGKRRRSKG
RPGY
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttcaagcgacttccaaatgttctcttagtattatcgaagaacatcaactgc
gacctgtctaacaagtacggcctcgctgtgaggccacttaaactgcttctacagtctcat
tcgtattctgtttcccgagtctggcgaggttcgtatcattatgctgcggagcaattctcg
gacgatgagtacgagtgcgacgttgagaacaatacggcctcatcttctgtggccaacatc
gatgagtggaaatggaaacttagcttgctatctcgaaatgagaaggatcaagagatcatc
tcaagagataacagagacaagagagactttgagcagatctcaaaccttgccaaaaagatg
gggctctactgttcaatgtatggaaaagtggttgttgcgagtaaagttccccttcctaac
taccgaccagatttggatgataaacgaccacaaagagaggttgctattcctttaagtttg
caaaggagggttgaaggtttactacaggaacattgtgatcgcattcggttaagttctgca
aaggctaatgagatttcaaatgatgccaagtctatcgacgaggttaaagatgttaatacg
gatgaatatggaaattcttatcttgatgagtctgtgatggaaaaggtacttcagcggagg
agtttacggatgcgaaatatgcaaagagcatggcaggaatcacctgaagggaggaagata
ctggatttcaggagatctctgccagcattcaaggagaaggaaaggctactccaggcaata
gcacaaaatcaggtagtagttatatctggagaaactggatgcggtaagactacacaactt
cctcagtacctactagaatcagaaatcgaaactggtcgaggagctttctgtagcataata
tgcactcagccccgaagaatctctgctatggctgtttctgaaagagtatccatagagcga
ggagaaccccttggtgaaacagttggctataaagttcgattagaaggtatgaaagggaaa
aacacccatctcttgttttgcaccagtggtatattacttcggaggcttctaagtgaccgt
aatctaaatgggattactcatgtctttgtggatgaaattcacgagcgaggcatgaatgaa
gattttctgttgattgtcttgaaggatctacttccacgccgccgggatttaagattaatc
ttgatgagtgccactttaaatgctgaacttttttccagttattttggaggagcaccaact
attcatatcccaggttttacatttccagtgagggcgtactttttggaagatgtgttagaa
gtaactggctataagttgacatctttcaaccaaattgatgattatggccaagagaaaacg
tggaaaacacagaaacaattagttccgcgaaaaaggaaaaaccaaatcactactcttgtt
gaggatgctcttgataaatcaaccctgggaaattacagttcaaacacacgagattctctc
tcatcctggatgcctgattgcataggttttaatcttattgaggctgttttgtgccacata
tgtcgtaaggagagacctggtgcagttttggtattccttactggatgggaggatattagc
agtttgagggatcaactgaaagctcatccacttttaggggatccaaacagggttttgctt
ttgacatgccatggttcaatggcaacatctgaacagagactcatatttgagaaagcccct
cagaacgtccgcaaagtagttcttgccactaatatggcagaggcaagcatcacaataaat
gatgttgtttttgttattgactgtggaaaggcaaaagaaaccacgtatgatgcgttaaac
aatacaccttgtctattaccttcatggatatcacaggcatctgctcggcaaagaagggga
cgggctggccgtgttcaacctggaaaatgttatcatctttacccaaaatgtgtttttgaa
gcattttctgagtatcaacttcctgaacttttgagaactccactgaattccctctgcctt
caaataaaaagtctgcaggttccgagtgtaggagaattcttgtcatctgctctacagcca
ccagagcccttggctgtacaaaatgccattggttttctaaagatgattggggcatttgat
gagaaggaaaacttgtcaaatctcggaaaatttttgtcaatgcttcccgttgaccctaag
ctaggaaaaatgctggttatgggtgctatcttccattgctttgatcctatccttactata
gtttccggccttagtgtcagagatccttttcttctgcctcaggacaaaaaagatttagct
gggacagccaaggctagattttctgcaaaggactacagtgatcatatggcacttgttcgt
gcttacgagggatggaaagatgcagaaagagaagggtcatcctatgagtactgctggagg
aacttcctctctgcccaaacacttcaggcaattgattcccttagaagacagtttagcttc
attttaaaggatgcaggaatagttgatttagatggtagcacgagcaataagttaagccat
aaccagtctcttgttcgtgcaatcatttgttctggtctctttcctggcgtagcatctgtt
gtgcacagagagacttccatgtctttcaaaaccatggatgatggccaggtcttactatat
gcgaattctgtaaatgcgcgttatgatacaattcccttcccatggctggtattcggcgag
aaagtgaaggtcaacacagttttcttacgagattccactggcatatctgattcgatgctg
attctttttggtggagcagtgaaatgtggtgtacaggctggtcatttgaaaatgttgaat
ggctacattgaattctttatggattctagtttggcggaatgctatttgcaactcaaagaa
gaacttgataagcttattgaaaacaaacttcagaatccggggcttgacattctcaaggaa
ggcaagtatcttgttctttctgttcaagagttggtgtccggtgaccaatgcgaggggaga
tttgtcttcggtcgggaaagtaggaagcaggtgtctaccgacgacaaattcacaagggat
ggctccaacccaaagagcttgctacaaaccttgctaatgagggcaggacatacccctcca
aaatacaaaaccaaacacctcaaaacaaatgaattcagggcgctggttgagtttaaggga
atgcaatttgtgggtaagcctaagaaaaacaagcagcttgcagagagggatgctgccata
gaggctctagcttggttgacacacacctcggacaacaacactaattcagacgacgactct
cctattgatgtaactgataacatgctaaaactccttggcaaacgaaggcggtctaaaggt
cgccctggttattga
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