KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111803482
Entry
111803482         CDS       T05351                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    111803482
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cpep04121]
    111803482
   03036 Chromosome and associated proteins [BR:cpep03036]
    111803482
Enzymes [BR:cpep01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111803482
Ubiquitin system [BR:cpep04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    111803482
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     111803482
    Noncanonical PRC1 (PRC1.1)
     111803482
    Noncanonical PRC1 (PRC1.3/1.5)
     111803482
    Noncanonical PRC1 (PRC1.6)
     111803482
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_4 zf-RING_4 DUF4695 zf-rbx1 zf-Nse zf-UDP zf-RING_6 zf-RING_11 ZNF512_C2HC
Other DBs
NCBI-GeneID: 111803482
NCBI-ProteinID: XP_023543673
LinkDB
Position
LG10:complement(1083448..1088801)
AA seq 438 aa
MPARKRVYETVHADLLPRLHDTFNDRSEDGESEESDRSSSSGQEDKDEFVAVKLSDIRRD
VQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDT
LIAVLYPDIDKYEEEELAFQEEEKARNKQIQSSIAQTLKRQTEALGRKRSKPLRRLSSRG
RKSFQNHIESLSFDENEDENDYDASKNSSSADERMDTRPNKRSRRGGPVRFSQSSSATGA
DGADGGSNENDYEVNKERVGASMGLVSSSEKLSWGKGGIRSHTRYGGINGGGGKISRNNR
ITKLSDYVRNSENISEEELDVHLMLVSMDKTRIPALRSPYICCRPSVTIGHLRQLVALET
ALSVDVIEMYVVKELQMKINPSTSGTFLDPCKESAQILNQQETLSMDKLKTHRLACGYLV
CLEPTPHKCLKTVHPLLE
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgccggctcggaagcgcgtttacgagactgttcatgctgatcttttgccgcgactccat
gataccttcaatgatcgctctgaagatggagaatctgaggaatccgatcgaagctcttca
tccggtcaagaagataaggacgaatttgtagccgtgaaattgtcagacattcggagagac
gtgcaatgtcctatttgcttaggaatcatcagaaaaaccagaacagtgatggaatgtctg
caccgcttctgcagggaatgcattgacaaatcaatgcgtttaggtaacaatgagtgccct
gcttgccgcactcattgtgccagtcgacgctctttgagagatgatccaaattttgatacc
ttaattgctgtgttgtatccagatatcgacaaatatgaggaggaggaactagcttttcaa
gaagaagagaaagctcgtaataagcagatccaatcttccattgctcagacacttaaacga
caaactgaagctttgggtcggaaacgttcaaaacctttgaggagattaagttctagagga
cgaaaaagcttccaaaatcatattgagagtctaagctttgatgaaaacgaggacgaaaat
gattatgatgccagcaaaaattcatcttctgctgatgagcgtatggatactagacctaat
aaaagatccaggagaggtggtcctgttagattttcccagtcttcctcagctactggagca
gacggagcagatggtggcagtaacgaaaatgattatgaagtgaacaaagaaagagttggt
gcatcgatggggcttgttagtagctcagaaaaactttcttggggcaaaggtggaataagg
agtcacactagatatgggggtattaatgggggtggcggtaaaatttccaggaataaccgc
atcaccaagctgtcagattatgttcgaaactcggaaaatatcagtgaggaggagttggac
gtccaccttatgctcgtttccatggataaaactagaatacccgcgttgcgaagtccatat
atttgctgcaggccatctgtgacgattggacacctacgtcaattggttgctcttgaaaca
gcactttcagttgatgtcattgaaatgtacgtggtgaaagagctgcaaatgaaaatcaat
ccttcaacctcgggaacttttctggacccatgtaaagaaagtgcacagatattaaaccag
caagaaacgctgtcaatggacaaactcaaaacacaccggctagcttgtggctatctggta
tgccttgaacctacaccacacaaatgcttgaaaacagtgcacccactacttgaataa

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