Cucurbita pepo subsp. pepo (vegetable marrow): 111803503
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Entry
111803503 CDS
T05351
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111803503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111803503
03041 Spliceosome [BR:
cpep03041
]
111803503
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111803503
Spliceosome [BR:
cpep03041
]
Complex B
Other components
Prp19-related factors
111803503
Complex C
111803503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
111803503
NCBI-ProteinID:
XP_023543705
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All DBs
Position
LG10:4688123..4692627
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AA seq
912 aa
AA seq
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MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLDLVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDLIEFL
VNSNLWQEAAENLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYSQFEESML
AHKMENMDLSDEEDEAQENGLEEEEEEDIRLDLDLSVSKFEKKILLGFWMYDDNDIDLRL
ARLDHLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTRQILTYTEAVRTVDPMKAV
GKPHTLWVAFAKLYETHKDLPNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHKNFKG
ALELMRRATAEPSVEVKRKVAADGNEPVQMKVHKSLRLWTFYVDLEESLGTLESTRAVYE
RILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY
GKTKLERARELFEHAVETAPADSVRPLYLQYAKLEEDHGLAKRAMKVYDQATKAVPNNEK
LSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDQDVKTMCLKYAELEKSLGEIDRARGI
YVFASQFADPRSDLNFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ
KDQTLNLDEAKDKLKQAGVTEDEMAALERQLAPAIEDSAKDNSRKVGFVSAGVEESQADG
VPKVTAHQEDIELPDESDSEEDEKVEIAQKEVPSAVFGGLARKKEDSDETDREKDDDSHL
GALERIKRQKKA
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttcccaagatttatatccgtcgcaagatgaccttctctacgaggaagagctt
cttcggaatccttttagtttgaagttgtggtggcgctacctcatagcacgagcagaatca
ccattcaagaagcgattcattatttatgagcgagctctgaaagccctcccgggtagctat
aagttatggtatgcatatctgcgcgaacgcctcgatctggtacgaaatcttcccattact
cattctcagtacgaaactcttaataacacgtttgaacgagcgcttgtgaccatgcataaa
atgcctagaatatggataatgtacctacaaactttgacaaaccagaaattagtgacccga
acgcgtcggacgtttgaccgagccctttgtgcccttccagtgacacaacatgatcgcatt
tgggagccatacctcgtttttgttagccaaaagggtattccaattgagacctcacttaga
gtttatcgaaggtatttaaaatatgatccaacacatattgaagacttgattgaatttttg
gttaattcaaatctgtggcaagaagctgctgagaatttggcttccgtgttgaatgacgat
caattttattctattaaggggaagaccaagcatcggctgtggttagagttgtgtgatttg
ctcactagacatgccactgaggtttctgggttgaatgttgatgctataatacggggcggc
attaggaaattcactgatgaagtagggcgcttatggacatcacttgcagaatattacatc
agaaggaatttgcacgagaaggcaagagatatatttgaagaggggatgactactgttgtt
acggtaagagattttagtgtgatatttgattcatactctcaattcgaggagagtatgcta
gctcataaaatggaaaatatggatttgagtgacgaggaagatgaagcacaggaaaatggt
ctcgaggaggaggaggaagaggacatccgattagatcttgatttatcagtttctaagttt
gagaagaagatacttctagggttttggatgtacgatgataatgacattgatttaaggcta
gctaggttagaccatctaatggacagaagaccagaattagctaatagtgttcttctacga
caaaatcctcataatgtcgaacaatggcatcggaggattaaattatttgagggcaatccc
acaagacagatattgacgtatactgaggctgtgagaacagtggaccccatgaaagcagta
ggtaagcctcataccttgtgggttgcttttgctaagctgtatgaaacccacaaagatctt
ccaaatgcaagagttatttttgacaaagctgtacaagttaactacaagactgtggataac
ttggctagcatttggtgtgaatgggcggaaatggaattgaggcataaaaattttaaagga
gctctcgagctcatgcgtcgagctacagccgagccatctgttgaagtaaaacgaaaagtg
gctgctgatggtaatgaaccggtccagatgaaggtgcacaagtccctaagactttggacc
ttttatgtggatttggaagaaagtcttggaaccttggagtctacccgtgcagtttatgag
cgaatactagacttaagaattgctaccccacaaataataatcaactatgctttgcttctt
gaggaacacaagtacttcgaagatgcattcaaggtttatgaaaggggcgtcaagattttc
aaatatcctcatgttaaagatatatgggttacatatctatccaagtttgtaaaaagatat
gggaagacaaaattggagcgagcaagagaactatttgagcatgcggttgaaacggcaccc
gctgattcagttaggcctttgtatcttcaatatgcaaagcttgaggaagaccatggtttg
gcaaagcgagctatgaaggtctatgatcaggcaactaaagctgttccaaataatgagaaa
ttgagcatgtatgaaatatacattgcccgtgcagccgagatatttggtgttcctaaaact
agagaaatctatgaacaagcaatagaatctggtcttccggatcaagatgtgaagaccatg
tgcttgaagtatgctgagctggagaagagtttgggagaaattgatcgtgctcgtggaata
tatgtatttgcttcacagtttgcagacccgagatcagatttgaacttttggaacaagtgg
cacgagtttgaggtccaacatggaaatgaagatacttttagagagatgcttcgtatcaaa
aggagtgtttctgctagctatagccagacacattttattctgccggagtatctaatgcaa
aaggatcagacactgaaccttgacgaggcaaaagacaaattgaagcaggctggggttaca
gaagacgaaatggctgctcttgagaggcagttggccccggcaatcgaagactcggccaaa
gataacagccgtaaagttggttttgtgagtgctggagtggaggaatcacaagcagatgga
gtaccaaaggtcactgctcatcaagaagacattgaattgccagatgaaagcgactcggaa
gaagacgagaaggttgaaattgctcaaaaagaagtcccatctgcagtgttcggaggcctt
gctcgaaagaaggaagactccgatgagaccgacagagagaaggatgatgacagccatctt
ggcgcgcttgagagaataaaaaggcaaaaaaaagcttag
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