Cucurbita pepo subsp. pepo (vegetable marrow): 111803581
Help
Entry
111803581 CDS
T05351
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03020
RNA polymerase
cpep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111803581
09124 Replication and repair
03420 Nucleotide excision repair
111803581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111803581
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111803581
Enzymes [BR:
cpep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111803581
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111803581
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111803581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
111803581
NCBI-ProteinID:
XP_023543828
LinkDB
All DBs
Position
LG10:1138152..1146764
Genome browser
AA seq
1200 aa
AA seq
DB search
MDEYEEYDRNMNDDDDDIDQTMHDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ
NTMQEIVDESADIEIRPESQHNPGHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFP
KAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN
SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMA
ESQNRPPSTMFVRMLSQTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH
ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEM
LPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML
FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ
VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL
MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR
RLRRRVDVNTEVGVVRDVRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESP
EDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARVNPVEAYSDTYTHCEIHPSLIL
GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
VKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAAR
YSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG
MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV
QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI
ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEVKPLKDQKKKGS
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtacgaagagtatgatcggaatatgaatgacgacgacgacgatattgaccag
actatgcacgacgatgaagaagagatcacgcaggaagatgcttgggcagtaatttcagcc
tattttgaagagaaggggttggtccggcagcagctcgattccttcgatgagtttattcag
aatactatgcaagaaatcgtggacgagtctgctgacatcgagattcgtcccgagtcgcag
cacaatcccgggcaccagtctgatgttgctgagacgatatacaagatcagctttggtcag
atatacttgagtaagcctatgatgaccgaatctgatggagagactgcaacattatttcct
aaggctgcacgattgaggaatctaacgtactcggcgcctttatatgtggatgtctcaaaa
agagtcataaagaaaggtcatgatggtgaagaagtcactgaaacccaagattttacaaaa
gtttttattgggaaggttcccatcatgctccggtcgagttattgcacgttgtatcagaat
tctgagaaggatctgactgagctcggggagtgtccatatgaccaaggaggatattttatc
atcaatgggagtgagaaagttcttattgcccaagagaagatgagcacaaatcatgtgtat
gttttcaaaaaaagacagcctaacaagtatgcctttgtggcagaagtccggtctatggct
gagtcacaaaatagaccacctagtaccatgttcgtacggatgctttctcaaactagtgcc
aaggggggctcttcaggacaatacatacgtgccactctgccttacattcgaactgagatt
cctattattattgtgtttcgtgctctaggatttgttgctgacaaagatattctagagcat
atatgttatgacttctctgatactcaaatgatggagttgcttcggccttccctggaagag
gcttttgttatccaaaatcagcaggttgcacttgactacattgggaagagaggatcaaca
gttggtgtgactaaggaaaagaggattaagtatgccaaagagatccttcaaaaagaaatg
cttcctcatgttggcgtaggtgaattttgtgagactaagaaggcatactatttcgggtat
ataattcaccggctactcttatgtgctcttggccggagagcagaagatgatagggatcat
tatgggaacaaaagactggaccttgctggtcctttacttggaggcttgtttagaatgctc
tttagaaagttaacaagagatgtgagaggttacgtacaaaagtgtgttgataatggaaag
gatgttaatttgcaatttgccatcaaagcaaaaactattactagtggcctgaaatattcg
ctagccactggaaactgggggcaggcaaatgcagccggtacaagagctggagtatcacag
gtgttaaatcgtttgacatatgcttctaccttgtctcacttacgaaggctgaattcaccc
attggacgagaaggtaaactggccaagcctcggcagttgcataattcacaatggggaatg
atgtgtcctgctgaaacacctgaaggacaagcttgtggactggtaaagaatcttgcattg
atggtttatataacagttggatctgcggcatatcctattttggaatttttggaagaatgg
ggcacagaaaattttgaggaaatttctcctgctgtcattcctcaagcgacaaaaattttt
gtcaatggttgttgggttgggatccatcgtgatcctgaaatgttggtgaagactttgagg
cggttgaggcgacgagttgatgtaaatactgaagttggagtagttagagatgtccgcttg
aaagaactacggatatatactgattatggccgttgtagtcgtccattattcattgttgag
aaacaaaggcttctcataaagaagaaggatatccatgctcttcagcaaagggaatcccct
gaagacggtggttggcatgatcttgtagcaaagggattcattgaatacatagatacggag
gaagaggaaaccaccatgatttccatgacaattagtgatcttatacaagcaagggtcaac
ccggttgaggcttattctgacacctatactcattgtgaaatccatccatcattgattttg
ggcgtttgtgcttcaattattccatttcccgaccataaccagtccccacgtaacacgtat
caatctgctatgggtaagcaagctatgggaatctatgtcaccaactaccaattccgaatg
gatactttggcctatgttttgtattatccacaaaagcctcttgttactacacgagctatg
gagcatctccatttcaggcagcttccagctggcattaatgccattgttgccatcgcttgc
tactctggttataaccaggaagattctgttatcatgaatcaatcctctattgaccgtgga
ttttttaggtcacttttcttccggtcttacagggatgaggagaaaaagatgggaactctt
gtaaaagaagattttggacggcctgacaggactaatactatgggtatgaggcatggctcc
tatgataaattagatgacgatggtcttgcaccacctggtactcgagtatcaggtgaggac
gttattattggaaagactactcctatttctcaggaagaagctcagggacaagctgcacgt
tactcaagacgtgatcatagcattagtttacgtcatagtgaaaatgggattgtagatcaa
gttctactgactacaaatgctgatggattgaggttcgtaaaagtaagggtgagatctgtt
cgaataccccagattggggataagttcagtagtcgacatggacaaaaagggacagtggga
atgacttacacacaagaagacatgccttggactgtggaaggaatcacccccgatattatc
gtgaatccacatgctattccttctcgtatgacaattggtcagcttattgagtgtatcatg
gggaaggtggcagcccacatgggaaaagaaggagatgctaccccatttactgatgtcact
gtggataacatcagtaaggctctgcataagtgtggttatcagatgcgtggatttgaaacc
atgtataatggccatacaggccggcggctctcagcaatgatattccttggtccgacttac
taccaaaggctgaagcatatggttgatgacaaaatacattcacgtggaaggggtcctgtg
cagatccttacgagacaacctgctgagggtcggtcacgtgatggtggtctccgatttggg
gagatggagcgtgactgcatgattgcccatggtgctgctcattttctcaaggagaggttg
ttcgatcaaagtgatgcatataggatccatgtctgtgagtgctgcggattgatagccatt
gcaaatctcaagaagagttccttcgaatgtaggggatgtaaaaacaaaacggacatcgtt
caggtttatatcccttatgcctgtaagcttctcttccaagagcttatggctatggcaata
gcgccacggatgttcacaaaggaagttaaaccattgaaagaccaaaagaagaaaggatcc
tga
DBGET
integrated database retrieval system
