Cucurbita pepo subsp. pepo (vegetable marrow): 111803616
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Entry
111803616 CDS
T05351
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111803616
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111803616
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111803616
Protein phosphatases and associated proteins [BR:
cpep01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111803616
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111803616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
CoV_nucleocap
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
111803616
NCBI-ProteinID:
XP_023543883
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Position
LG10:3999921..4003226
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AA seq
239 aa
AA seq
DB search
MADSHRKRYSRSPSPWRAPSRSRSRSRSRPRSRSRSWSRPRSRSRGRSRSRSRGRGENVN
NPGNTLYVTGLSTRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMDNVDDANR
CVKHLNQSILEGRYITVEKSRRKRPRTPTPGHYLGLKSTRDSGYRGERGSRYRGGSFRED
YGHRRSPRRSPYRGAREYSPRHSPPPYGGGRSRRDHSRSPPYSPYGGGSPDRRYPRGSR
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atggccgattctcatcgcaaaaggtactctcgatctccttctccctggagagctccttca
agatcaagatctagatcacgatctaggccaaggtctagatccagatcgtggtcaaggcca
aggtcccgaagtcgtggaagatcaagatccagaagtcgaggaaggggggagaatgtcaat
aaccctgggaatacgctttatgtcactggcctatctacaagggtcactgaaagagacctt
gaagaacacttttccaaggagggcaaggtatcttcttgtttccttgtggttgaacctcga
actcggatttcccgtggttttgcatttgtaacgatggacaatgttgatgatgctaatcgg
tgtgttaagcatctcaaccagtcaattctagaaggtcgatatataactgtggagaagtca
cggaggaaacggccaagaactccaacgccaggacactacttggggttgaaaagcaccaga
gactctggctaccgtggcgaacgaggtagcaggtatcgtggtggctccttccgtgaggac
tatgggcatcgtcgatccccaagacgctcgccatatcgaggggcccgagagtactcccct
agacactcaccgcctccatatggtggtgggagatcaaggagggatcactctaggtcgcct
ccttactctccttacggcggcggcagcccagataggaggtatcctcgtggctctaggtga
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