Cucurbita pepo subsp. pepo (vegetable marrow): 111804005
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Entry
111804005 CDS
T05351
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111804005
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111804005
Enzymes [BR:
cpep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
111804005
Protein phosphatases and associated proteins [BR:
cpep01009
]
HAD phosphatases
Fcp/Scp phosphatases
111804005
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111804005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
dsrm
DSRM_2
Motif
Other DBs
NCBI-GeneID:
111804005
NCBI-ProteinID:
XP_023544414
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Position
LG10:5314238..5320475
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AA seq
820 aa
AA seq
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MSRLGFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISS
FSLRSKLQSSLPVEQPHLIQLHYSCFHELKTAIVLIGDEEIHLVAMPSKQKNFPCFWCFA
VPCGLYLSCLGMLNLRCLSIVFDLDETLIVANTMKSFEDRIEALRLWIGRETDPLRISGM
SAELKRYMDDRSLLKQYIEHDTVNDNGRIFKVQLEEVPPLNGNCEKVVRPIIRLQDKNIV
LTRINPEIRDTSVLVRLRPAWEELRSYLIARGRKRFEVYVCTMAERDYALEMWRLLDPEA
HLIATKQLLDRVVCVKSGSRKSLLNVFQSGSCHPKMAMVIDDRSKVWEDKDQPRVHVVPA
FTPYYAPQAEAASVVPVLCVARNVACDVRGCYFKEFDESLLRRILEISYEDEVADLPPAP
DVSSYLMSEEAGFVSNENVNAPICEGMNGVEVERRLNQPDDKHVIDMANNPTTSQTDVRA
DTPQLPLPLNTNVIGPKSLRTLLPSQKPGLLGAPIRRDLSADHDMKRGLLAMKPGIDLRT
QNFGDPPILSRMPGHLPPCGLQVQGSSLVDDDSSKGPQNSRSSGLVQESDASKADKPRSS
NNSQVLAGVAISQNRATSNNKEYQTEAGKVTIPPPPSLYIGVLQDIGRRCSSKVEFKTVV
STSKDLQFSVEVLFTGEKIGVGLGKTRKDAQQQAAENALHNLADKYAAHMKPLLGPVDTD
LDKLSIGAENGFLWDTVAPAVNELPKEDVSHKENNSEASDEPGSANSDSANQQQQQQHVQ
KRLSSPRSFPSKRSKEDEVHGPQYLAAASWQQQKNGHSIT
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcttagggttcaaatcggtggtctttcacggcgacgtgcgtcttggggaacta
gacgctattccggcgacagaccagaattttcagtttccgaacaacgagattagaatccac
cgcatatcgccgcccagtgagagatgccctcccctttcagttcttcagacaatttcttca
ttttctctcaggtctaagctacaatcttccttgcctgttgagcagccgcacttgatccag
cttcactactcctgcttccatgaattgaagacggcaattgtgttgattggggacgaggaa
attcacctggttgcaatgccgagcaagcaaaagaactttccgtgcttttggtgttttgcg
gtgccctgcggcctatatctatcctgtctaggaatgctaaatctcaggtgtctttcaatt
gtttttgatctagacgagacacttattgtggcaaacactatgaaatcttttgaggataga
attgaagctcttcgactttggattgggcgagagacagatccattgcgtatatctggaatg
tctgctgaactcaagcggtacatggatgatcggtcgctgttgaaacagtatattgagcac
gatacagtaaatgataatggaaggattttcaaggtgcagctggaggaggttcctccacta
aacggcaactgcgagaaagtagttcgtcctataattagattgcaggacaagaatattgtc
cttactcgcatcaacccagagattcgtgataccagtgttcttgtgaggttacgtcctgca
tgggaagaattaagaagctatttgattgctaggggtcgtaagcgatttgaagtttatgta
tgtacgatggctgaaagagattatgcattagaaatgtggaggcttcttgatccagaagct
cacctcattgcaacaaaacagcttcttgatcgtgttgtttgtgttaaatcaggttctagg
aaatctttgctgaatgtcttccaatccggttcatgtcatccaaagatggccatggttatt
gatgaccgttcaaaggtttgggaagacaaagaccaaccgcgtgttcatgtagttccagca
tttacgccttactatgctcctcaagcagaggcagcaagtgtggtccctgttctttgtgtg
gcaaggaatgttgcatgcgatgtcaggggttgttacttcaaagaatttgatgagagtttg
ttgcgacggattctcgaaatttcttatgaagatgaagtggctgatctacctcctgctcct
gatgtgagcagctacttgatgtcagaggaagctggctttgtatccaatgagaatgtgaat
gctccaatttgtgaaggaatgaatggtgtcgaagtggaaaggagactgaatcaaccggat
gataagcatgtaatagacatggccaataaccctactacaagccaaacggatgttcgagca
gatactcctcagttgccgctgcctcttaatacgaatgtcattggaccaaaatctttaaga
accttactgccttctcaaaagcctggtttgctcggggcccctatcagacgagatctctct
gctgatcatgacatgaagagaggactccttgcaatgaaacctggtatagatctcaggaca
cagaacttcggtgatcccccaattctctccagaatgcccggacatttaccaccatgcgga
ttacaggttcaaggaagttcattagtggatgacgactccagtaaaggacctcaaaatagt
cgatcttcaggcctcgttcaagagtctgatgcttcaaaagctgataaaccacggtctagc
aacaattcacaagttctggcaggagttgctatatctcaaaatcgagcaactagcaataac
aaagagtatcaaactgaagcagggaaagttaccatacctccgcccccttctttatacatt
ggagttctacaagatattggtcgtagatgtagctcaaaggttgagttcaaaactgttgtc
agtaccagcaaggatttgcaattttcagttgaggttttgtttactggcgagaagattggt
gttggattgggtaagacaaggaaagatgctcaacaacaagctgctgagaatgcgcttcac
aatttggcagataagtatgctgcacatatgaagcctcttttgggacccgtggatacagat
ctcgataagctttctattggagccgaaaatggatttttatgggacactgttgctcctgca
gttaacgaattgccgaaggaagatgtttcgcataaagagaacaactccgaggcttctgat
gaacctgggagtgccaattctgattcggcaaatcagcagcagcagcagcagcatgttcag
aagcggctgagttccccaagatcatttccaagtaaacgatcaaaggaagatgaagtacat
gggccacaatatcttgcagcagcttcgtggcagcagcagaagaatggccattccattact
tga
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