KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111804046
Entry
111804046         CDS       T05351                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    111804046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpep03400]
    111804046
DNA repair and recombination proteins [BR:cpep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     111804046
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA FHA_2
Other DBs
NCBI-GeneID: 111804046
NCBI-ProteinID: XP_023544483
LinkDB
Position
LG10:complement(4524910..4530784)
AA seq 650 aa
MFFSGKKVGYLVPLDKNLEEGNSELKIPLSQGPNIIGRSNVLVSDKRISRKHITLTTSTD
GSAKLLVEGANPVVINSGDGRKKLGPRESVILRDGEVIELIPGHYLFKYAAHCPNTRPDS
EDLGQKRVRKLVDDTISERKAKRVEMGGPLENQQTGISQSKKDNSVEAIRNFHVPDDKLP
MTFRLLSVKGLPPWANTSCVRISDVIQGDILFAVLSNYMVDIDWLIPACPTLAKVPHVLV
FHGEGDGTLDHMKRKKPANWILHKPPLPISFGTHHSKAIFLVYPRGIRIVVHTANLIYVD
WNNKSQGLWMQDFPWKDQNSSTRGCAFEDDLVDYLSALKWPEFPANFPALGNFNINPSFF
RKFDYSNAAVRLIASVPGYHTGRHLKKWGHMKLRSVLQECVFDKEFKRSPLVYQFSSLGS
LDEKWMAEFAASLSSGSSADKTPLGLGEPLIVWPTVEDVRCSLEGYAAGNAIPSPLKNVE
KGFLRKYWAKWKSYHSGRCHAMPHIKTFARYNGQKLAWLVLTSSNLSKAAWGALQKNNSQ
LMIRSYELGVLFLPQKRPDYSFSCTKSGGSAQNKSRPSENLEEKTELVTLAWQENRKRES
LSEVIQLPLPYELPPQPYGPQDVPWSWDRRYTQKDVQGAVWPRQVQLYAS
NT seq 1953 nt   +upstreamnt  +downstreamnt
atgttcttctccgggaagaaggttgggtatttggttccacttgataaaaatctagaggaa
ggtaattcggagctaaagatacccctctctcagggccctaatatcatcggccgtagcaac
gttctcgtttctgataagaggatcagccgcaagcatatcactcttaccacctccactgac
ggttctgctaaactacttgtggaaggtgcaaatccagttgttattaattctggtgatggt
agaaagaaacttggtcctcgtgaaagtgtgatactccgggacggggaggttatagaactg
attcccggccattatcttttcaagtatgcagctcattgtcccaatacaaggcccgattct
gaggatttgggacagaagagagttcgaaaattggtggatgatacaatttctgagagaaag
gctaaaagagttgaaatgggaggccctttggagaatcaacaaactgggatctcgcagtcg
aagaaagataatagcgtggaggccattcgcaattttcatgttcccgacgacaaattgccc
atgactttcagacttttgagtgttaaaggcctgccaccatgggctaatacatcatgtgtg
aggattagtgatgttatacagggagacattctctttgccgtcctgtcaaattacatggtg
gatattgattggttaatacctgcatgtcccactcttgcaaaagtccctcacgtgctggtt
tttcatggcgagggtgatggaacactggatcatatgaagaggaagaagcctgcaaattgg
attttgcacaaaccaccactacccatatcgtttgggactcaccattcaaaagcaatattt
cttgtctatcctcgaggaataagaatagttgtacacaccgcaaatctaatctatgttgat
tggaacaacaaaagccaaggtttatggatgcaagatttcccttggaaagatcaaaattcc
tctacaagaggatgcgcatttgaagatgacttggttgactatcttagtgctttgaagtgg
ccagaatttcctgctaattttccagcacttggaaacttcaatatcaatccatcgtttttc
agaaagtttgattatagtaatgcagcggttagattgatcgcttctgtacctggatatcat
acgggtcgccatttaaagaagtggggccatatgaagctacgttctgttctccaggaatgt
gtttttgataaagagtttaagcgatctcctcttgtttaccagttctcctccctcggatcg
ttggatgaaaaatggatggccgagtttgcagcatcactatcatcaggttcctcagctgat
aaaacacctcttggtcttggggaaccactaatagtatggcctactgtggaagatgtcaga
tgctctctggagggttatgctgctggaaacgccattcccagtccattaaagaatgtggag
aagggatttttgagaaaatattgggcgaaatggaaatcataccatagtggccgatgtcat
gcaatgccgcacataaagacatttgctcgttataatggtcagaaactagcttggttagtt
ctaacatcatctaacctcagcaaagctgcctggggagcacttcagaagaacaattctcag
ctaatgattcgttcttacgagcttggggtgctctttcttcctcaaaaaaggcccgattac
agtttttcttgtaccaagagtggaggttcagcacagaacaagtcaagaccatcagaaaac
ttagaagagaaaacagaactggtgacattggcttggcaagaaaacaggaaaagagaatcg
ttgtctgaagtaattcaattgcctttaccttatgaactccctcctcagccatatggccct
caagatgttccctggtcttgggatcgtaggtatacccaaaaagatgtccaaggtgcggtt
tggccacgtcaagttcaactttatgcttcctag

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