Cucurbita pepo subsp. pepo (vegetable marrow): 111804160
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Entry
111804160 CDS
T05351
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111804160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111804160
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111804160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
111804160
NCBI-ProteinID:
XP_023544636
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Position
LG10:6212367..6220667
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AA seq
936 aa
AA seq
DB search
MDVDQSDSQKAQTLQSLTSGSLGSSLSKLAGSSQGIPAGKDFHFYYNFDEFKIPIRSIDR
QSQSMLETIGSSAEVWGKEMAFPEDNDDAYDWLVNVNDDILERFDVSLDEFQRIRKEEEE
SGRAVAFTADADDGFQLVCGKKKKSPSHGDEVHDSFESSVKVATKDRRTLGVKPKVPFHI
PTIRRPQDEFNILVNNANQPFEHVWLQRSEDGTRFVHPLEKLSVLDFVDKINEDFQPVYP
PSLDCTPFKFIEEVNDLKELAAKLRRENEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVV
DTLKLRIHVGPYLREVFKDPSKRKVLHGADRDVVWLQRDFGIYICNLFDTGQASRVLKLE
RNSLEYLLHHFCGVAANKEYQNADWRLRPLPEEMLRYAREDTHYLLYIYDLMRKKLSSMP
RESEESDLPLVEVYKRSYDVCLHLYEKELLTESSYFYVYGLQGSGFNAQQLAVAASLFEW
RDIVARAEDESTGYILPNKTLLEIAKQMPVTINKLRRLLKSKHSFIERNLASIVTIIRHS
MLNSSAFEEAAERLKEVRTEAASEENTSANEHQETNMPDTSNLRYAIPIVKDSAVDNTAN
DQICSSSSQSKVAPLEHGYRPFVPGKCVMVDHSMHPVLNGMGPTTSELGEHSNGDKYPVA
QVTGVNITLQKKTNRGGLGSLLGNSAPKRKLDTDIKDKEENKLDKIRSSVTLPFHSFLGT
SEPLKSVVEPTTMTALKAQNSEAPAAESTKSSNIELPAMPVSKPCPTDEIIMLEDDSDDD
DEDEDEELHPVAEAATDEPKLKGFSASSPLEIDDDDDNNDEPISLSELSSSFQKCLNSNE
QAMNLQETDDSGKQSGFLQIQPFDYKAARKQIEFGEDLEEDSKLEDNKDPKASKNAGAKS
DLDLNRVHKNSETVELPQGKRRHAFPATGNRSATFR
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgatcagtctgattcacagaaggctcagactctgcaatccctaaccagtggt
tctctcggttcgtctttgtcgaagctcgccggctcttcccagggtattccggctggcaaa
gactttcacttttattacaactttgatgaattcaaaatcccgatacggagcatcgaccgg
caatctcagtcgatgctcgagaccattggctcgtccgctgaagtttggggcaaagaaatg
gcgttccccgaggataacgacgacgcgtatgattggttggttaatgttaacgatgatatc
ttggagcggttcgatgtgtcgctggacgagtttcagaggattcgaaaggaggaggaggag
agtgggagggcagtggcttttacggcggacgctgatgatgggtttcagttggtgtgtggg
aagaagaagaagagtccgagtcatggagacgaggtgcacgattcttttgagtctagtgtg
aaggttgctaccaaggacaggagaactttgggggtgaagccgaaagtgccattccatata
ccgactatccgcagaccgcaggacgagtttaacatcttggttaataatgcaaatcagcca
tttgagcatgtctggttgcaaaggagtgaagatggcacgcggtttgtacatccactggag
aagctatctgtattggactttgtcgataagattaatgaagattttcaacctgtttatcca
ccatctttggattgcactcctttcaaattcattgaggaagttaatgatttgaaagaattg
gcagctaaattgcgacgggagaacgaatttgcggttgatttggagcataatcagtatcga
tcttttcaaggacttacctgtctgatgcaaatttctacaagaactgaggattttgtagtt
gatacattgaagcttagaattcatgtggggccctatttgagagaggttttcaaggatcct
tcaaagagaaaggtgctgcatggagcagaccgagacgttgtgtggcttcaacgggatttt
gggatttatatttgcaacttatttgacactgggcaggcttcaagagttttgaaactggaa
agaaatagtctggagtatctccttcatcacttttgtggtgttgcagctaataaagagtac
cagaatgcagactggagattaagacctcttcctgaggagatgctgagatatgcaagggaa
gatacacattatttgctatatatttatgatttgatgaggaagaaactgtcctcaatgccc
cgtgaatctgaagaatctgatcttcctttggtagaggtctacaagcgaagttatgacgta
tgcctgcatctttacgagaaggagctgttgacagaaagttcatatttttatgtatacgga
ttgcagggttctggtttcaatgctcaacagcttgctgttgctgctagtctctttgagtgg
cgagatattgttgctcgtgcagaggatgaaagtactggttacatactgccaaacaaaacg
cttctggaaatcgccaaacagatgcctgtcaccattaacaaattacgtagattactgaaa
tcaaagcattcattcattgagcgcaatcttgcttcaattgttaccatcattaggcattcg
atgctgaattcaagtgcatttgaagaggctgctgagcgtttgaaggaagtccgtaccgag
gcggcatcagaagaaaacacatcagctaatgaacatcaagaaactaatatgcccgatact
tcgaatttgagatacgcaatcccaattgtgaaagacagtgctgttgataatactgccaat
gatcagatctgttcgtcctcttctcagtctaaagttgcacccttggaacatggataccgg
ccctttgtacctggaaaatgtgtaatggtagaccactcaatgcatcctgttctgaatggg
atgggcccaacaacatcggagctgggtgaacattccaatggcgataaatacccggtagcg
caggttactggagtgaacattacgttgcaaaagaaaactaaccgaggaggtctcggttcg
ctattgggaaactcggccccaaagagaaaattagatactgatataaaggataaggaagag
aacaagttggataaaatccgatcttctgtgactctaccctttcattcattcttgggaacg
agtgagccattaaagtccgttgtagaaccaaccaccatgactgcattaaaagctcaaaat
tccgaagcacctgctgccgagtcgacaaaaagctcgaatatagagctacctgcaatgcct
gtctcaaaaccctgcccaacagatgagattatcatgttggaagatgattcagatgacgat
gacgaagacgaagacgaagaattgcatcctgttgcagaagcagccaccgatgagccaaag
ttgaaaggttttagtgctagttcacctcttgaaatagacgacgacgacgacaacaacgac
gaaccaatatctctgtccgaattgtcttctagctttcaaaaatgtttgaattctaatgaa
caagctatgaaccttcaagaaactgacgattcaggaaaacaaagtggttttttgcagatc
caaccgttcgactacaaagcagcaaggaaacaaatagaatttggagaagatttggaggaa
gactcgaaactcgaggacaacaaagatccgaaggcatcgaagaacgctggggcaaagtca
gatttagatctgaatcgagttcacaagaacagtgaaaccgtggaattaccgcaaggcaaa
cgacgccatgccttccctgctaccggaaaccgaagtgcaactttccgctaa
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