Cucurbita pepo subsp. pepo (vegetable marrow): 111804209
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Entry
111804209 CDS
T05351
Name
(RefSeq) cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111804209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111804209
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
111804209
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_2
AAA_5
TIP49
AAA_22
AAA_16
RNA_helicase
AAA_14
AAA_18
AAA_28
IstB_IS21
AAA_17
AAA_33
nSTAND3
NPHP3_N
Rad17
Parvo_NS1
Nucleolin_bd
Bac_DnaA
Mg_chelatase
Vps4_C
AAA_3
Viral_helicase1
ATPase_2
AAA_11
NACHT
TsaE
Cytidylate_kin2
NB-ARC
SR-25
Motif
Other DBs
NCBI-GeneID:
111804209
NCBI-ProteinID:
XP_023544703
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Position
LG10:9676184..9682239
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AA seq
817 aa
AA seq
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MAGGRSPSVVNRGFLLQRIKSCRHKCPTVDDIVEHLQSTYRDYRHLKKSPFTLIVQQTLD
SQLTKSPKSIPSASTSKIKRQLQDSEDEGADCSTIGKKRHRRVDVREQRLQSMENMHLRR
IQRSNQDDSSSSSSSSSDSDNSGDGALSTSEDAIYGEKVEPEFDLMKSMLRTSYAESKKS
KNEHLEKSVELEVAIDNKVAEKICVGNASKGVLQKETQDSPNGTEVETGGAKEEGPRFKD
LGGMKSVLDELKMEVIVPLYHPQLPLWLGVRPMAGILLHGPPGCGKTKLAHAIANETGVP
FYKISATEVVSGVSGASEENIRELFAKAYRTAPSIVFIDEIDAIASKRENLQREMERRIV
TQLMTCMDGFHKLVDSTDASSKKDSSNVRPGYVLVIGATNRPDAVDPALRRPGRFDREIV
LGVPDENARTEILSVLTSNLRLEGSFDLLKIARATPGFVGADLTALANKAGNLAMKRIID
QRKCELSSDVVDKEHMEDWWKQPWLPEEMDKLAITMTDFEEAIQMVQPSLRREGFSAIPS
VKWEDVGGLEQLRAEFDRYVVRRVKYPEDYEGFGVDLETGFLLYGPPGCGKTLIAKAVAN
EAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCILFFDEVDALTTKRGKEGGWV
VERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDPAVLRPGRFGKLLYVPLPGPTERGLV
LKALGRKKPIDIGVDLLAIGQMQACDNFSGADLAALMNEAAMAALEEKLTSVSSKLESAS
CTIKMTDFERALTKISPSVSEKQKHFYELLSKSLKAA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggctggcggcaggtcgccgtccgttgtgaatcgtggtttccttcttcaacgaattaag
tcttgtcgccataaatgtcccaccgtcgacgacatcgtcgagcatctccagtccacttac
cgggactaccgacatctcaagaagtcacctttcactttaatcgtccaacaaaccctcgac
tcgcagctcacgaagagccctaaatccattccttctgcttccaccagcaaaatcaagcgc
caattgcaagattctgaagatgaaggcgcagattgcagtaccattggaaagaagcggcat
aggagagtcgacgtacgcgaacagcggttgcagagtatggagaatatgcatctcaggagg
atacaacgcagcaatcaggatgattcgtcgtcgtcttcgtcttcttcatcggattctgat
aatagtggcgatggagcgttgtcgacatcggaggatgccatttacggggaaaaggtagag
ccggagttcgatctgatgaagtcgatgctccgaacatcttatgcagagtcgaagaaatcg
aagaatgagcatttggagaagagtgtggagttggaagttgccatagataataaggttgct
gaaaagatttgtgtggggaatgcaagcaagggggtattgcagaaggagacacaggattct
cctaatgggacagaagttgaaacaggtggagcgaaggaggaagggccaaggtttaaggat
ttgggagggatgaagagtgtgctagacgaattgaagatggaggtgattgtgccactctac
cacccacagctgccattgtggttgggggttcggccgatggctggaattttgctacatgga
ccccctggttgtgggaagacaaagttggctcatgccattgcgaacgaaactggcgtgcca
ttctataagatttccgccacggaggtcgtgtcgggtgtatcaggtgcgtcggaagaaaat
attagagagctttttgccaaagcgtataggacagcaccctcaattgtttttattgatgag
attgatgcaattgcatcaaagagagaaaatctacagagagaaatggagagacggattgta
acacaactaatgacttgcatggatggattccacaaacttgtagattctactgatgcaagt
tcaaagaaagatagttccaatgttagaccaggctatgttcttgtaattggtgctaccaat
agacctgatgctgttgatcctgcattaaggaggcctggtcgttttgatcgtgagatcgta
ttaggggttccagatgaaaatgcaaggactgaaattctctctgtccttaccagcaacttg
agactcgaaggttcatttgatcttctaaaaatagctagggcgactcctgggtttgttgga
gctgatttgacagcattagctaataaggctggtaatcttgccatgaagaggataattgat
caaagaaaatgtgaattatcttctgatgttgttgataaggaacatatggaagattggtgg
aagcagccttggttgcctgaagagatggacaaattggctataaccatgactgactttgag
gaagcaattcaaatggtacaaccttcactgagaagagaagggttttctgcaattcctagt
gtaaagtgggaagatgttggaggcttagaacaactaagagcagagttcgatcgctatgta
gttcggcgtgtaaagtatccagaggattatgagggctttggtgtggatctagagacggga
tttttgctatatggtcctccgggatgcggtaaaacactaattgctaaggccgttgcaaat
gaggctggagccaatttcattcacattaaggggcccgagttactaaataaatatgttgga
gaaagtgaacttgcagttcggacactatttagtcgggcaaggacgtgcgcaccatgcatt
ctattcttcgatgaagtggatgccttaacaacaaaacgtgggaaagaagggggatgggtt
gtggagcgattattgaaccagttactcatagagttggatggagcagaacaacgacgaggt
gtctttgttattggtgctacaaatagaccggaggtcatggatcctgctgttctgcggcca
ggtagattcggaaaacttctttatgttcctctccctggtccaactgaacgagggctagtc
ttaaaagctcttggaaggaagaagcctattgatattggcgtagatctacttgcgattgga
caaatgcaggcttgtgataattttagtggggctgatcttgctgcactgatgaatgaagct
gcaatggctgctttggaagaaaaattgacatcagtcagcagtaaattggaatcagcatca
tgtacaatcaagatgaccgattttgagcgtgcgctgactaagatttcgccctccgtgtca
gaaaagcaaaaacatttttacgagcttttgtcgaagagcttaaaagctgcttaa
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