Cucurbita pepo subsp. pepo (vegetable marrow): 111804391
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Entry
111804391 CDS
T05351
Name
(RefSeq) nucleolar protein 6
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111804391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111804391
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111804391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D4
Nrap_D3
Nrap
Nrap_D2
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
111804391
NCBI-ProteinID:
XP_023544945
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All DBs
Position
LG10:complement(3561860..3571490)
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AA seq
1056 aa
AA seq
DB search
MDSNTLLDPMEMKVGELLKEFQLDYSAALVKLVEDTVSTIKKAIKLIPEDLKVTAAAAPG
FIRDIGADKVEFKFRKPKSIKIGGSYAFQGIAKPDVNVDLLVGLPKECFHEKDYLNYRYH
AKRFLYLCTIKKYLNSSSMFSKVEWSTLQNEARKPVLIVHPALEELKEAPGFFVRIIPTI
AASFFSISKLNLKRNNIHALNQGSLLAATPKYNTSILEDMYFEDTSEMVKKPFLESKSLL
ETLILLKVWARQRASIYVHDCLNGFLIAVILSYLITQNKINHSMTTIQMFRVAVKFIASS
NLWNHGLYFKLGRQSTISKEEKKQYKDLFPVVICNPSSNFNIAFRLSQSGFAELQDEAAL
ALACLEKCSNGGFEEVFMTKIDFAVKYDHCIRLNLRGQVELYASGFCMDDECWRLYEQKV
HGILSQGLTDRAKFIRVSWRNTEPGCTIENGLSVFDTQPLLVGISISSVEKAFRVVDIGP
NADNKEDALKFRRFWGEKAELRRFKDGRIAESTVWETDQWTRHLILKRIVEYIFVRHLSP
MSKDRIMHAVDQIDFSLLHGSGDPITFSGSLLAAFEVLSKRLRSIEDIPLKVSAVQPLDS
AFRYTSVYPPEPHPLADEKTSDLRIQQKLAPSCIQPLEVMIQLEGSGNWPTDEVAIEKTK
TAFLLKIGESLQNIRGMACIASEDSVNVLVSGYAFHLKIWHEKGLSLVNKEFGNELSNRI
SSTDKQLFIESQHSSMISGLQARHSIYGPVVRLAKRWIASHFFSACLVEEAVELLVASIF
LKPLPFHAPLSRVTGFLRFLRLLSEYDWTFSPLIIDINNDLGVNEEKEIADKFNMTRKDL
QENPQSASPAMFLATAYDKASEAWTRFSPKSSELKRLVAYARSSADLLSRLILQHQVDSF
QWECLFRTPLSNYDAVILLHRDKLPYPQRLLFPSELNRGIHVAKGNPSKIFSPFLLPKNL
KASSENIKDKLLVNFDPLRCYIADLQKEFSNTFNLWYDSLGGDAIGLTWGQHSSKKRGRD
EAVEEKEPAEVLKSVGETGKGLMRSVYLLKAPRLTT
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggattccaatacgcttttggacccaatggagatgaaggtcggagaactcttgaaggaa
tttcagcttgactactccgctgctcttgttaagctcgttgaggacacagtgtcaactata
aaaaaagcaattaaactcattccagaggacttgaaggttactgcggccgcagctccgggt
tttatcagggatattggcgcagacaaagtggaattcaaatttaggaagccaaaatcaatt
aaaatcggtggtagttatgcctttcaaggcattgcaaaacctgatgtaaatgttgatctt
ttagttggcttgccaaaggagtgtttccacgagaaagactacctcaattaccggtaccat
gctaaaaggttcctttacctctgcacaatcaaaaagtatttgaactcatcttcaatgttt
tcaaaggttgaatggtccacacttcagaatgaggctcgaaaacctgtcttaattgtccat
ccagctttggaagagctgaaggaagctcctggattctttgtcagaataattccaacaata
gcagcatccttttttagcatttcaaaattgaatctcaaacgaaacaacatccatgccttg
aaccaagggagcttacttgcagctacacctaagtataacactagcattttggaagatatg
tacttcgaggatacttcagaaatggttaagaagccttttcttgaatcaaaaagtttgtta
gaaactttaattctactaaaggtttgggctcggcagagagcttcaatatatgtgcatgat
tgcttgaacggatttttaatagctgtaatattatcatacctcattactcaaaataaaata
aatcattcaatgacgacaattcagatgttccgtgttgccgtgaaatttattgcctcttcg
aatttatggaatcacgggctctattttaagcttggacgtcagagcactatttcaaaggag
gaaaagaagcaatataaagatttatttcctgtggtcatctgcaatccgtcttccaacttt
aacattgcatttcgactatcacagtcaggtttcgctgagcttcaagatgaggctgctttg
gcacttgcatgcttggagaaatgcagcaacggtggatttgaagaggtttttatgaccaaa
attgactttgctgttaaatatgaccattgcattagattgaatttgaggggacaagtcgag
ttatatgcatcaggcttttgtatggatgatgagtgttggagactatatgagcagaaagta
catgggatcttaagtcaaggcctgactgatagagcaaaattcattcgtgtttcctggagg
aacacggaaccaggatgcactattgaaaatggattatcagtatttgatacgcagccattg
cttgttggaatttcaattagctctgtggaaaaagcttttcgtgtggtcgatattggtcct
aatgctgataacaaagaagatgccctaaagttccggagattttggggtgaaaaggctgag
ctcaggagatttaaagatggcagaattgcagaaagcacagtttgggaaactgatcaatgg
acgagacatctcattttgaagagaattgtggaatatatttttgttcggcacctttcaccg
atgtcaaaagaccgcattatgcatgctgtggatcagattgatttctccctgctccatggt
tctggagatccaataacattttctggaagtttgcttgcggcttttgaagttttatcaaag
cgattacgttccattgaagacattcctttgaaggtgtctgccgtacagcctttagactca
gctttcaggtatacatctgtttatcctcctgaacctcacccactagcagacgaaaagaca
agtgatctgcgaatacagcaaaagcttgctccatcctgcattcagccactggaagttatg
attcagctggaaggctctgggaactggccaactgatgaggtagcaattgaaaaaaccaaa
acagccttccttcttaaaattggagagagtctgcagaatattcgggggatggcgtgtatt
gcttctgaagattctgttaatgtacttgtctctggttatgccttccacctaaaaatttgg
catgaaaaaggcctgagcttggtgaataaggaatttggaaatgaattatcaaatcggatc
tcctcaacagataagcaactttttattgaaagtcagcattcaagcatgattagtggatta
caggctcgtcactcaatatatggaccggttgttaggttggcaaaaagatggatagcctca
catttcttttcagcatgcttggtagaggaagcagttgaactgttggtagcatcaattttc
ctgaagcctctaccctttcatgcaccactttctcgagtcacaggttttttaaggttccta
agattactgtcggaatatgactggactttttctccattgattattgacataaacaatgat
ttgggtgtgaacgaggagaaagaaatagctgataaatttaacatgacacgaaaagatttg
caagaaaatccgcaaagtgcaagtcctgccatgttcttagcaacagcttatgacaaggca
tccgaggcttggacccggttctcaccaaaatcatcggagttaaaacggttggttgcttat
gctagaagcagcgcagatttgttgagtagactaatattacagcatcaggtcgactctttt
cagtgggagtgccttttccgaacaccattgagcaactacgatgctgttattcttctccat
agagataaattaccgtacccacaacgccttctcttcccatctgaactgaaccgaggaatt
catgtcgccaaagggaatcctagcaagatcttctctccatttttgttgcctaaaaacttg
aaagcaagttctgagaacatcaaggacaagcttttggtaaattttgatccattaaggtgt
tatattgcggatctgcagaaagaattctccaacactttcaacttatggtatgactctttg
ggaggcgatgcaattggactaacttgggggcaacacagttcaaagaagcgtgggcgcgat
gaagctgttgaggaaaaagaaccagctgaagtgctaaaatctgttggtgaaactggtaaa
ggtctaatgaggagtgtctacctactcaaggcgccaagactcacgacttaa
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