Cucurbita pepo subsp. pepo (vegetable marrow): 111805268
Help
Entry
111805268 CDS
T05351
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111805268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
Ribosomal_L27e
Motif
Other DBs
NCBI-GeneID:
111805268
NCBI-ProteinID:
XP_023546019
LinkDB
All DBs
Position
LG11:complement(6110094..6116357)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSTSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDQQ
PRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDY
PVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLII
DFEPVKPYEGPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVISEVAKPGLQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKV
LQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEENEGPALQQQKR
KRLWGLVVCHNSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCD
MLMRDAPLGIVSRSPNIMDLVKSDGAALLYKKKIWRLGLTPNDFQLLDIASWLSEYHMDS
TGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQK
DDARKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQT
TLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIG
KHLLTLVEDSSVEVVRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLR
ENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAM
AKLTGWSREEVIDKMLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFL
ARNGMYVECLLCVNKILDKDGAVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGY
IKRQIQNPLSGIIFSRRLLERTELGVEQKELLRTSGLCQKQISKVLDESDIDKIIDGFID
LEMDEFTLHEVLMVSISQVMLKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLADFLLI
SVSYAPSGGQLTISTDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEE
GFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRTT
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtctacctctagacctagtcagtcttctagcaactctgggcggtccagacatagcact
agaattattgctcagacatctgttgatgcgaagctgcaagctgattttgaggaatctggg
aattcgtttgactactcaagttcagtgcgtgtcactagtgatgttagcggagatcaacag
cctaggtcagacaaagttactacagcttatctccatcatattcagaaaggcaaacttatt
caaccatttggttgcttgttggccttagatgacaaaacattcaaggttattgcgtatagt
gaaaatgcccctgaaatgttgaccatggtgagccatgctgtcccaagcatgggggattac
cctgttcttggcattggcacagatgtaaggactattttcaccgcacctagtgcttctgca
ctgttgaaggccttgggctttggagaggttacacttcttaatcctatcctggtgcattgc
aagacttctggaaaacccttctatgcaattgttcatcgtgttactggaagcttaatcatt
gactttgagcctgtgaagccttatgaaggtccagtgactgcagctggagctctacaatca
tataaacttgccgccaaagcgattactagattgcagtctttgcctagtggaagcatggct
aggctttgtgacacaatggttcaagaagtttttgaactaacaggttatgatcgagttatg
gcttataaattccatgatgatgatcatggggaagtgatctctgaagtcgcaaagcccggc
cttcagccatatcttggtttgcattatccagcaactgacattcctcaagctgcacgtttt
ttgttcatgaaaaataaggtccggatgattgttgattgtcgtgcaaaacatttaaaagta
ctccaagatgagaaattacagtttgatctaactttatgtggttcaactttaagagctcca
cacagttgccatttacagtatatggaaaacatgaactctatagcctctttggttatggca
gttgtggttaatgaaggggatgaagaaaatgaaggccctgctttgcagcaacaaaagaga
aagagattatggggcttggtagtatgtcataattcaagtcccagatttgttccgtttcct
cttaggtatgcttgtgagttcctagctcaagtatttgctattcatgtgaacaaggaatta
gagttggaaaatcaaattatagaaaagaatattctgcgtacgcagacactcttgtgcgac
atgctaatgcgtgatgctcctttaggtattgtgtcgaggagtcctaacataatggatctt
gtcaaatctgatggggctgccttgttatataagaaaaaaatttggcgattaggattgaca
cctaatgacttccagttgctggacatagcttcgtggctttccgagtatcatatggattca
acggggttgagtactgacagtttgtatgatgcaggataccctggagctattgctttaggt
gatgaagtgtgtgggatggcagctgtgaggataactaataatgacatgattttttggttt
cgatctcacactgcttcagagattcgatggggtggagcaaagcatgaacatggtcaaaag
gatgatgccagaaaaatgcatccaagatcatctttcaaggctttccttgaagtagtcaag
acaagaagtttgccctggaaggactatgagatggatgcaatccactctttacaacttatc
cttagaaatacttttaaggatacagatgcaactgaaataaatagaaaatcaattcaaaca
acacttggtgacctaaaaattgaagggaggcaagaattggaatcagtaacaagtgagatg
gtccgattaatcgagacagctactgtgccgattttagctgttgatttagatgggttaatt
aatgggtggaatacaaaaattgctgaattgactggactgcctgtggataaagctatcggc
aagcatttacttacgttagtggaagattcatctgtagaagttgtcaggaagatgttgttc
ttggcattgcaaggacaagaagagcaaaacgttcaattcgagatcaagacacacggttct
cacattgaggttggctccatcagcctagttgtaaatgcttgtgcaagtagggacttgcgt
gaaaatgtcgtgggtgtgtgttttgtagcacaagatatcactggtcagaagatggtaatg
gacaagttcactcgattagaaggcgattacaaagccattgtacaaaatcccaatccattg
atccctccaatatttggatcagatgaatttggatggtgctcagagtggaatcctgcaatg
gcgaaactaactgggtggtcacgtgaagaagtaatcgataagatgcttttgggagaggtt
tttggtgttcacaaatcatgttgtcgtttaaagaatcaagaagcttttgttaatcttggg
attgtcttgaacaatgccatgtgtggtcaagatcctgaaaaggcttcctttggtttctta
gctcggaacgggatgtacgtggaatgtcttctatgtgtcaataagatcttggataaagat
ggcgcggttacagggttcttttgctttttgcagcttcctagtcatgagttgcaacaagca
ctaaatatccaacgcttatgtgagcaaactgcattgaagagattgagagcattgggatac
ataaaaagacagatacaaaatcctctttctgggataatcttttcacgaagattattggag
cgcaccgagttgggagtagaacaaaaagaacttctgcgtactagcggactctgtcaaaag
cagatctccaaggttctcgatgagtcagacatcgataaaattattgatgggtttattgat
ttagaaatggacgagtttacattgcatgaagtattgatggtatcaattagtcaagtgatg
ctaaagattaaaggaaagggtatccagatagttaatgagactccagaagaggctatgtcc
gagaccttatatggagatagtttaaggcttcaacaggtcttggcggactttctattgata
tcagttagttatgcgccttcaggaggccaactaacaatttcaaccgatgtgaccaagaat
caattaggaaagtcggtccatctggtgcatttggagttcaggataacatatgctggagga
ggtataccggagtcgttgctgaacgagatgtttggaagcgaggaggacgcgtccgaagag
ggtttcagtctgctcatcagtagaaagctggtgaagctgatgaatggagacgtacgatat
atgagggaagccgggaagtcgagcttcatcataactgttgagcttgctgcagctcacaag
tcaaggacaacgtag
DBGET
integrated database retrieval system
