Cucurbita pepo subsp. pepo (vegetable marrow): 111805393
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Entry
111805393 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111805393
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111805393
Spliceosome [BR:
cpep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111805393
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
MMS21_N
PhoH
Motif
Other DBs
NCBI-GeneID:
111805393
NCBI-ProteinID:
XP_023546237
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All DBs
Position
LG11:5655938..5665024
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AA seq
1178 aa
AA seq
DB search
MPSPAINVFSIISPQHLWPPLSYPFPSSLCPRCSSPPIQATRFCRLKPLPIFSPFPVPFR
PSVRSPRSIFSEKPQLSDVDEDEDEDEDEDEDEDDDDDDDVAAEEYDIDAFGELEQRYDE
VELSMEATEISIAPEEFKSQRVEKLLGEVREFGEGIVDVDELASVYNFRIDKFQRQAIEA
FLRGSSVVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRETFGDSN
VGLLTGDSAVNKDALVLIMTTEILRNMLYQSVGMASSESGLFHVDVIVLDEVHYLSDISR
GTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSTKRPVPLNWHFSTK
TSLLPLLDEKGTHMNRKLSLNYLQLHASGAKLYKDDGSRRRNPKRHGNEISDDRTSSLSR
QATLSKNDINSIRRSNVPQVVDTLWQLKSKDMLPAVWFIFSRKGCDAAVQYIEGKNLLDD
YERSEVELALRKFRIQFPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVV
FATETLAAGINMPARTAVIASLSKRSNSGRTQLTSNELLQMAGRAGRRGIDKKGHVVLLQ
TPYEGAEECCKLLFAGIEPLVSQFTASYGMVLNLLAGAKVTHTSEMDGTKAFQAGRTLEE
ARKLVEQSFGNYVGSNVMIAAKEELVKIEKEIEVLNLEITDEAIDKKCRRLMSDVAYNEL
VELQEGLRSDKRQRTELRKEMELQRICALKSLLQNLGDGQLPFLCLQYKDSEGVQHSIPA
VLFGNMDSSKLINMFPADNSLSGAEPNLGKNLDPGAESSYYVALGSDNSWYLFTEKWIKT
VYKTGFPNVALTKGDPLPREIMRTLLDKEGMKWEKLADSELGSLSCMEGSLETWSWSLNV
PVLNSLSENDELLQMSESYMESLTRYKEQRNKVSRFKKRISRTKGFREYKKILDMANIIE
DKIRQLKARYKRLSNRIQQIEPSGWKEFLQISNVIHEIRALDINSHVMFPLGETAAAIRG
ENELWIAVVLRNKFLVQLKPTELAGVCASLVSEGIKIRPGRDNNYIFEPSRTVINMVNFL
EEQRNSLLDLQQKHGVDIPCSLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRT
IDLLAQIPKLPDIDPSLQRNASTASDVMNRSPISELAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccctctcccgccattaacgttttctccatcatttctccccaacatctctggccgcca
ttatcttatcctttcccctcctctctatgtcctcgttgttcttcacctccgattcaggcc
acgaggttttgtcgccttaaacctctccccatcttctctccctttccagttccatttcga
ccttccgtccgctctccgaggtccattttctctgaaaaacctcaactctccgatgtcgac
gaagacgaggatgaggatgaggatgaagatgaagatgaagatgacgacgacgacgacgac
gtggcagccgaggagtacgatatcgatgcgtttggagaattggagcagaggtacgatgaa
gtggaattgtcgatggaagctactgaaatctccattgcacctgaggagttcaaatcgcag
agagtcgaaaagcttctcggtgaagttagagagtttggagaaggaattgtcgatgttgat
gaactcgcttcagtttataatttccgtatcgacaagtttcagcgacaagccatagaagca
ttcttgagaggatcgtcggtggtggtatcggcgcctaccagcagtggcaagactttgatt
gcggaggcggcggctgttgctactgtagccaggaagagacgattgttttacacgactcca
ctgaaagcattgtcgaatcagaagtttcgggagttccgtgagacgtttggagacagcaac
gttgggcttcttacgggagattctgcagttaataaagatgccctggttttgatcatgact
acagaaattttgcgcaacatgttgtatcagagtgttggaatggcctcatctgaaagtgga
ctttttcacgttgatgtaattgttttggatgaagttcattaccttagtgatatctctcgg
ggcacagtgtgggaagagattgttatttattgcccaaaagaagtgcagcttatttgtctc
tctgcaacggttgcaaatccagatgagctggctggctggattggtcagattcatggtaaa
actgagttagtaacatcaacaaagcgtccagtaccattgaattggcatttctctacaaag
acctctttacttcctctccttgacgagaaaggaacgcacatgaataggaagctgtcgctc
aattatcttcagcttcatgcttcaggagctaaattgtacaaggatgatggatcaagaaga
agaaacccaaaaaggcatgggaatgagatcagcgatgaccgcactagcagcctgtctaga
caagctacactttcaaagaatgacataaactcaatccgccgttcaaatgttcctcaggtc
gttgatacattgtggcaacttaagtcgaaagatatgctgcctgcagtttggtttatattt
agcaggaaaggatgtgatgcagctgttcagtacattgaaggaaaaaacctgttagatgat
tatgagaggagtgaagttgaacttgcattgagaaaatttcgtattcaatttccagatgct
gtccgggaatcggctgtgaaaggacttctgcaaggagttgctgcacatcatgctggttgt
ctgcctctgtggaagtctttcattgaagagctgtttcagaggggactagtgaaggttgtc
ttcgcaacagaaacattagctgctggaatcaacatgccagctaggacagcagttattgca
tccctgagcaaacgaagcaatagtggtcgtacccagttaacctcaaatgaactgcttcaa
atggcagggcgagctggacgtcgaggtattgataaaaaaggtcatgtggtgcttcttcaa
actccatatgaaggtgctgaagagtgctgcaagctcctgtttgctggcatcgaaccactt
gtttctcagtttacagcttcatatggaatggtattgaatcttctcgcaggtgcaaaggtt
actcatacgagtgaaatggatgggacaaaagctttccaagctgggcgaacgctggaagaa
gctaggaagttggttgagcagagttttggaaactatgttgggagcaatgtcatgattgca
gcaaaggaggagcttgttaaaatagaaaaagagattgaagtgctcaatttagaaataact
gatgaagcaattgataaaaaatgcaggaggctcatgtcagatgtggcatataacgagtta
gtagagctgcaggagggactgcgatcagataaacgtcaaaggacggaactacgaaaagag
atggaattgcaaagaatttgtgccctcaagtctctgttacaaaatttaggagatggacag
ttgccctttttatgtttgcaatacaaagattctgaaggagtccaacattcaattcctgca
gttctctttggaaacatggactcatcaaagctcattaacatgtttcctgctgataattct
ttgagtggtgcagaaccaaatcttggtaaaaatctggacccaggtgctgaatcatcttat
tatgtggctctaggttcagataattcttggtacctatttactgagaaatggatcaaaact
gtttataaaactggctttcctaatgttgctttaactaaaggggatcctttacctcgggag
attatgaggacacttctggataaagagggaatgaagtgggagaagcttgctgattctgag
cttggcagtttatcatgtatggaaggatctctggaaacatggtcatggagtttaaacgtg
ccagttctgaatagtctttctgaaaatgacgaactcttgcaaatgtctgaatcatacatg
gaatccttaacaaggtacaaggagcaaagaaataaagtttcacgatttaagaaaaggata
tctagaacaaaaggattcagagagtacaagaagattttagatatggccaatattatagag
gacaagattagacaattgaaggctagatataaacggctaagtaatcgaattcagcaaatc
gaaccatcaggctggaaagagtttttgcagatcagcaatgtcatacacgaaattagagca
ctggatataaattctcatgtaatgttcccactcggagaaactgcagctgctatccgtggt
gaaaatgagctctggattgccgtggttctaagaaataagttcttagtacaactaaaacct
acagagcttgctggtgtctgtgcaagtttagtttctgaaggcatcaaaatccgccccgga
agagataacaattacatatttgagccatcaagaactgtaattaatatggttaatttctta
gaagagcagagaaattctctgttagatcttcaacaaaagcatggagtggacataccatgt
tccttggacagccaattttcaggaatggttgaggcttgggcctctggtttgacttggaga
gaaataatgatggattgtgcgatggatgagggagatctggcacgcctcttgcgacgaaca
atcgacttgttggctcaaattccgaagttgcctgatattgatccatctttgcaaagaaat
gcatcaactgcttctgatgtcatgaatcgttcaccaataagcgaattggctggataa
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