Cucurbita pepo subsp. pepo (vegetable marrow): 111805403
Help
Entry
111805403 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111805403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111805403
03041 Spliceosome [BR:
cpep03041
]
111805403
03009 Ribosome biogenesis [BR:
cpep03009
]
111805403
03016 Transfer RNA biogenesis [BR:
cpep03016
]
111805403
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111805403
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111805403
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111805403
Complex C
U4/U6.U5 tri-SnRNP related factors
111805403
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111805403
Transfer RNA biogenesis [BR:
cpep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111805403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111805403
NCBI-ProteinID:
XP_023546254
LinkDB
All DBs
Position
LG11:4305207..4319738
Genome browser
AA seq
1014 aa
AA seq
DB search
MEESPTLGKRKEFEEEAAVVETGNNQETSSNKRPKESKNLEDVKATPTQETVSNRRSLTR
TCVHEVAVPAGYTSTKDESLHGTLSNPVFNGTMAKTYPFTLDPFQQVSVSCLERNESILV
SAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTLS
PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKM
VFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFR
EDNFMKLLDTFAKQKQIAGHRTSNGKSSGRIAKGGSGSGGSDIYKIVKMIMERNFQPVIV
FSFSRRECEQHAMSMSKLDFNTDEEKDTVEHVFRNAILCLNEEDRELPAIELMLPLLQRG
IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRF
IGSGEYIQMSGRAGRRGKDDRGICIIMIDEQVEMGTIKDMILGKPAPLVSTFRLSYYSIL
NLMSRAEGQFTAEHVIRHSFHQFQHEKALPDIGKRVSKLEEEAATLDASGEAEVAEYHKL
KLDIAQLEKKMMSEITRPERVLYFLLPGRLVKVREGGTDWGWGVVVNVVKKPSAGLGILP
SRGGAYIVDTLLQCSPCLSENSSRPKPCPPRPGEKGEMHVVPVQLPLISALSKLRISIPS
DLRPVEARESILLALEELGTRFPQGFPKLNPVKDMSIEDPEIVELVKQIEELERKLYSHP
LHKSHEVDQIKCFQRKAEVNHEIQILKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGV
VQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIASLASCFIPGDKSNEQIQLRTELA
RPLQQLQDSARRIAEIQHECKLEINVEEYVESTVRPYLMDVIYCWSKGASFSEVIQMTDV
FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctcccacacttggaaagcggaaagaatttgaagaagaagcagctgtcgta
gaaactggcaacaaccaagaaacgagctccaataagcgacctaaagaatcgaaaaaccta
gaagatgtgaaggcaactccgactcaggaaactgtctccaaccgacgcagtttgacgcgg
acttgtgttcatgaagttgcggtcccggctgggtacacttctaccaaggacgagtcgctt
catggaaccctatcgaatccggttttcaatggtacaatggcgaaaacgtacccgtttaca
ctcgacccgtttcagcaggtatcggtttcttgcttagaacggaatgaatctattttggtt
tctgctcatacttcagctggaaaaactgcggttgctgaatatgccattgccatggctttt
agagacaagcagagggttatatatacttccccactgaaggctttgagtaatcaaaagtat
agggaattgagtcaagagtttaaagacgtgggactaatgactggggatgtgactctttcg
cctaatgctagttgtttagttatgacgacggagatacttagggggatgctttacaggggt
tcggaagttttgaaggaagtggcatgggtaatttttgatgaaattcactatatgagagat
cgggaaagaggtgttgtttgggaagagagtataatatttttaccaccggctatcaaaatg
gtcttcctttctgcaacaatgtccaatgccacggagtttgctgagtggatatgtaatatt
cacaagcagccttgtcatgtggtgtacactgattttcgaccaactcccttgcaacattat
gtttttcccgtgggtggcaatgggttgtatctcgtggttgatgaaaacgaacagttcagg
gaggataattttatgaagttgctcgacacatttgctaaacaaaaacagattgctggccac
aggacttcaaatgggaaatctagtgggagaatagctaaaggtggcagtggttccggaggt
tcggacatttataaaattgttaagatgattatggaacggaatttccaaccagttattgtc
ttcagtttcagtagaagagaatgtgaacaacatgcaatgtccatgtccaaacttgacttt
aacaccgatgaagaaaaggacacagtggaacatgttttcagaaatgcgattctctgcttg
aatgaggaagacagagagctacctgcaattgagctaatgttacctcttctccagagagga
attgctgttcatcattctgggcttcttcctgtaattaaagaattagtagagctccttttc
caggaaggtcttgttaaggccctttttgccacagaaacttttgccatgggtttgaacatg
ccagcaaaaacagttgtcttcactgcctttaaaaagtgggatggtgatagtcaccgattt
attggatctggtgagtacattcagatgagtggaagggctggacgtcgtggaaaagatgac
aggggtatatgtattataatgattgatgagcaggtggagatgggaacaattaaagatatg
attttgggcaaaccagctccccttgttagtacttttagactgagctactactcaatttta
aatttaatgagccgggctgaaggccaatttacagctgagcatgttattagacactcattt
catcagtttcagcacgagaaggcattgcctgatattgggaaaagagtgtcgaagttagag
gaggaagctgccacacttgatgcttcaggagaggctgaagttgctgaataccacaagtta
aagcttgatatagcacaacttgagaagaagatgatgtctgaaataacaaggccggaaaga
gttctctattttcttcttcctggtcggttggttaaggtaagagaaggggggacagactgg
ggttggggagttgtagttaacgttgttaaaaagccctcagctgggttaggcatcttgcct
tcacgtggtggtgcttatatagtggataccttactccaatgctctccttgtctaagcgag
aatagttcacgaccaaaaccttgtccaccccgtcctggagaaaagggtgaaatgcacgtg
gttccagttcagctgcctcttatttcagccttgagcaaactcagaatctctattccttct
gatctcagacccgtggaagcaagggaaagcatactgcttgcattggaagaactgggaact
cgttttccacagggttttccaaaattgaatccagttaaggacatgagtattgaagatcca
gaaattgttgagttggtgaagcagattgaggaacttgagcggaaattatattctcatcct
ctgcataagtcacatgaagtggaccagattaaatgttttcagaggaaagcggaggttaat
catgaaattcaaatactcaagaccaaaatgcgcgattcccagcttcaaaaatttcgtgat
gaactgaagaaccgttctcgggtcctgaaaaagcttggtcacattgatgcagatggtgta
gttcagttgaaggggcgtgcagcctgcttgattgacacaggagatgagctccttgttact
gaattaatgtttaatggaacattcaatgacttagatcatcaccagattgcatcccttgca
agttgttttataccaggagacaagtccaatgagcagatacagttaagaaccgagcttgct
agaccattacagcaactccaagatagtgcgagaagaatagctgagatacaacatgaatgc
aagttggagataaatgtggaagaatatgtggaatcaactgtaaggccgtatttgatggat
gtcatttactgttggtcaaagggagcgagtttttcagaggtgattcaaatgacagatgtt
ttcgagggtagtatcattcgaagtgctagaaggcttgatgaattcttgaatcagttgcgt
gctgctgccaatgctgtgggggaggtaaccttagagagtaagttttctgcggccagtgac
agcctccgcagaggtataatgtttgcaaactcactctatctgtag
DBGET
integrated database retrieval system
