Cucurbita pepo subsp. pepo (vegetable marrow): 111805440
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Entry
111805440 CDS
T05351
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
cpep03440
Homologous recombination
cpep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111805440
03420 Nucleotide excision repair
111805440
03430 Mismatch repair
111805440
03440 Homologous recombination
111805440
03460 Fanconi anemia pathway
111805440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpep03000
]
111805440
03032 DNA replication proteins [BR:
cpep03032
]
111805440
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111805440
Transcription factors [BR:
cpep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111805440
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111805440
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111805440
MMR (mismatch excision repair)
111805440
DSBR (double strand breaks repair)
HR (homologous recombination)
111805440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
DUF223
ASNSD1-SEP
Motif
Other DBs
NCBI-GeneID:
111805440
NCBI-ProteinID:
XP_023546313
LinkDB
All DBs
Position
LG11:9703567..9710020
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AA seq
621 aa
AA seq
DB search
MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLND
IIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENFAQKA
MPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIP
IAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF
YEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDAIPRQQFSFIP
ISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFC
NKEGQNLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDG
GGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCY
TACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQE
TGEEILGVSAKELYMLKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVV
KADRVNYSSESKYMLDLLSKR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcatctcacgccgaatgcaatctctgcaattgtcgctggtgacgttaattcc
aagcccctggtgcaggtcctagatatcaagctgatcggtaatacgcaggagaggtacagc
ctcttgatctccgatgctgtttctaccgagcaggctatgctcgcaactcagctcaatgat
attattaagactggacgagtcaagaaaggatcagttatccagttgatcgattatgtttgc
agtcccattaagagccgcaaggttattgttgtgctcagcctggaaactattatattggac
agtgagataattgggaatccaaaatcatctgctcaatcagagaattttgcacaaaaggca
atgccatctggaaatttagagcaacctgccaaggttggtaatcgtcttgtgagtgccaga
aatccagttaataatgtgcagagcttccaagctacagttcaacctccgtatcagccacct
ccaaattataaaaatcatggtgcaatcattaagaatgaggcaccagcccgtgtaattccc
atagctgcgttgaatccttatcagggacgatgggctataaaggcaagagttactgcaaag
ggtgatcttcgtcgctataataatgccaaaggtgatggaaaagttttctcttttgacctc
cttgattctgatggaggagagatacgtgtgacctgcttcaatgctgttgttgatcgtttc
tacgaggtcatagaagttggtaaagtttacttaatttctaaaggtagcctaaaacctgcg
cggaaggatttcaatcacctaaagaatgaatgggaggttttcttggaggcatcttccact
gtggaacattgtccagatgaagatgatgccataccaagacagcagttttcttttatacct
atcagtgaaattgaaaatgctgaaaccaactctattttggatgttattggtattgtaaca
tctatcaatccatcaattcctgttttgaggaaaaatggtatggaaactcaaagaagagtt
ctgaatttgaaggatgcgtctggcaggagtgtcgagctgacactgtggggagatttttgc
aacaaagaaggtcaaaatctgcaagaaataattaactcaggcctctcgccagttttggct
gtgaagtctgggaaagtaagtgatttcactgggaaatccattgggacaatttcttctaca
cagcttttcgtaaatccagatctttctgaggctctcatcttgagagactggtacgatggt
ggggggaagaatactacttctctgtctatttctaaagaaattatgtcaggatctgccaag
aatgagattcgaaagtctgtatctcagataaaagatgaaggacttggcagatctgataag
ccagattggataaccgtgaaagcaacaatatcgtttattaaaacagattccttctgctac
acagcatgtccgttaatgattggagatcgacaatgcaacaagaaggtgactagatcagga
aactcaaagtggctgtgtgaccggtgcaatcaagaatttgaggattgcgattacaggtat
cttctccaagcccaaatccaagaccatactggattgacatgggtgaccgccttccaggaa
actggtgaagagattctgggtgtctcagccaaggagttgtacatgttgaagtatgaacag
caggatgatgtcaagtttggtgaaataatcagaagtaaaattttcgatcaatttctgttt
agactcaaaatcaaggaggagatgtacggggatgaacagagagtgaaaaatactgtagtt
aaggcagatcgggtaaactattcttcagaaagcaaatatatgttggatttgctttcaaaa
aggtaa
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