Cucurbita pepo subsp. pepo (vegetable marrow): 111805820
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Entry
111805820 CDS
T05351
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111805820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111805820
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111805820
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Step II factors
111805820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
ABC_tran
AAA_30
AAA_16
TsaE
Sigma54_activ_2
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
111805820
NCBI-ProteinID:
XP_023546823
LinkDB
All DBs
Position
LG11:complement(8141228..8146244)
Genome browser
AA seq
1223 aa
AA seq
DB search
MVASAANGDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRRCETVDEFDSKL
KENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKGKFRALAIGDDKERAK
ELVKEIELEAHQKRGDRDVQDDRYKGRAGDRGRDRDRDRDRDRDRDGDRNRDRDRDRYRD
RDWDRDKDRDRRRDRYERDERHGGRDRDDDGGDDYQRSGRPRDRNRRNGYEENEGYRGDA
RDGNDNWRDDRDKHTQNGRHLPVDHEPELYKVYKGRVSRVMDTGCFVQINDFRGKEGLVH
VSQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKKDADDG
PRMNPSNTKDDGPVVRTGLSGIKIVEDDVTIPSRRPLKRMSSPERWEAKQLIASGVLSVN
DYPSYDDEGDGLLYQEEGAEEELEIELNEDEPEFLQGQSRYSIDMSPVKIFKNPEGSLSR
AAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYD
MPEWKKDAYGKDISFGQKSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKT
TQVTQYLAEAGYTTSGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD
TVIKYMTDGMLLREILIDDNLSQYSVVMLDEAHERTIFTDVLFGLLKQLVKRRPDLRLIV
TSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGD
VLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKV
VVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTG
PGKCYRLYTESAYRNEMSPTSIPEIQRINLGHTTLTMKAMGINDLLSFDFMDPPSPQALI
SAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTG
NIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRA
QDVRKQLLSIMDKYKLDVVSAGRNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYI
HPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQ
ERIEPLYDRYHEPNSWRLSKRRA
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggttgcttccgcggctaacggcgacgatggattgaagaagctcgagtacttgtccctc
gtctccaaggtatgttctgagctcgaaactcatttaggtttcggagataaagtacttgct
gagttcataaccgagatgggtcggagatgtgagacggtggacgagttcgattccaaattg
aaggagaacggtgccgaaatgcccgattactttgttcgctcgctcctgaggatcattcat
cttattcttcctccgcagaaggatgacaatgagaaggagttcaagaaggagaaggaatca
gatgggaaaaagggcaagtttagggccttggcgatcggggatgataaggagagagctaag
gagctcgtgaaggaaattgagttggaggctcaccagaagcgtggggacagagacgtacaa
gatgatcgatacaaggggagggcaggcgaccgaggaagagacagagacagagacagggac
agggatagggatcgagatggtgacagaaatagagatagagatagagataggtacagggat
cgggattgggatcgagataaggatagagataggcgcagggatagatatgaaagggatgag
agacatggtggtagggatcgtgatgatgatggtggtgatgattatcagagaagtggaagg
ccaagggatcggaataggagaaatgggtatgaagaaaatgaaggttacagaggggatgcg
agagatggtaatgacaattggagagatgatagggacaagcatacacaaaatgggcgacac
ctccctgtcgatcacgaacctgaattgtacaaggtctacaagggtagagtttctagagtg
atggacacgggttgctttgtccagataaatgatttcagaggcaaggagggtctggttcac
gtttctcagatggctactcgaaggattaccaatgccaaggatgttgtaaagcgagatcaa
gaggtttatgtcaaggttatttcagtttcagggcaaaagttgagcctttctatgagggac
gtggatcaacattctggtaaggatttgcttccattaaagaaaaaagatgccgacgatggt
cctagaatgaatccttcaaatacaaaggatgatggcccggtggttaggactggcctttct
ggaattaagattgtggaagatgatgttactattccttcacgcagacctttaaagagaatg
agctcacctgagagatgggaagccaaacaactgattgcttctggggttttaagtgtaaac
gactatccttcatatgacgatgagggagatgggctactatatcaagaagagggtgctgaa
gaagagcttgagattgagttgaatgaagacgagcctgaatttctgcaaggccagagtaga
tactcaattgacatgtcgccggttaagatattcaaaaatccggaagggtctttgagccgg
gcagctgcacttcaatctgcactgattaaggagcgtagggaagttcgtgagcagcagcaa
aggaccatgctcgattcaattccaaaggatcttaatcgaccttgggaagaccctatgcca
gagacaggtgagaggcatcttgcacaggagctcaggggcgttggcttgtcggcctatgat
atgcctgagtggaagaaggatgcttacggaaaagatattagtttcgggcagaaatcgaag
ctctctatccaggaacagaggcaaagcttacccatttacaagctgaagaaagaacttatt
caggccgttcatgataatcaggtacttgttgtcattggtgagactggttcaggtaagaca
acccaggtaactcagtatcttgctgaagctggatacacaacctccggtaaaattgggtgc
actcaaccacgtagggtggctgcaatgtctgtcgcgaagagggttgctgaagagtttgga
tgtcgcttaggagaggaagttgggtatgcaattcgttttgaggattgtactggacctgat
actgtgatcaagtatatgacagatggtatgcttcttagggagattttgattgatgataac
ttgtcacagtactcggtagttatgctcgatgaagctcacgagagaacaatcttcactgat
gttctttttggattgctgaagcagcttgtgaaaaggagacctgaccttcgactgattgtc
acatctgctactttagatgccgaaaaattttcaggatatttctttaattgtaatattttt
acaattcctgggcgaactttccctgtggagatcctctatactaagcagccggaaactgat
tatcttgatgctgctttaatcacagtcttgcagatccacttgacagagcctgaaggtgac
gtacttcttttcttgactggtcaggaggagattgattttgcatgtcagtctctatacgag
agaatgaaaggactcggtaaaaatgttcccgagttaattattctaccagtctacagtgcc
ttgcccagtgaaatgcagtccaggatttttgaaccagctcctcctggtaagaggaaagtt
gtagtggcgactaacattgctgaggcttcattgacaatagatggaatcttttatgttatt
gatcctgggtttgctaaacagaatgtatataacccaaagcaagggcttgattctcttgtt
atcacaccaatttcacaagcatcagccaaacaacgtgcggggcgtgctgggcgaacagga
cctggaaaatgttaccgcctctatactgagagtgcttatcgcaacgagatgtctcctaca
tcaataccagaaatccagagaatcaatcttggtcatactactcttactatgaaagccatg
gggataaatgatctcctgtcatttgattttatggatccaccttcaccccaagctctaatt
tcagccatggaacaactttacagtctaggagcactggacgaagaaggacttctgactaaa
ttgggtagaaaaatggctgaatttcctttagatccacctttgtctaagatgctgctagct
agtgtggaccttggatgtagtgatgagattttgacgataattgcaatgattcagactgga
aatatcttttacaggccaagggaaaaacaagcccaggctgatcaaaaaagggccaagttt
ttccagccagagggagatcatctgactttgcttgcagtttatgaggcgtggaaagccaaa
aacttttcaggcccttggtgttttgaaaactttgttcaatctcgatccttgaggagagca
caggatgtgaggaaacaacttctttcaattatggacaagtataaactggatgtggtgagt
gcaggcaggaatttcacacagataaggaaggcaattacagcagggttctttttccacgca
gccagaaaggatcctcaagagggttatcgaacgctagtcgagaaccaaccggtttatatc
catccaagcagcgctttattccaaagacaacccgactgggtcatataccacgagctagtc
atgacaacaaaagagtacatgcgtgaagtgacagtcatagatcccaaatggcttgttgaa
ctagctccaagatacttcaaagttgcagacccaacaaagatgagtaagcgaaagcgacaa
gagcggattgaaccactctacgacaggtatcacgaacctaactcttggcgattgagtaag
agacgagcttaa
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integrated database retrieval system
