KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111806036
Entry
111806036         CDS       T05351                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a-like
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03010  Ribosome
cpep04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    111806036
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111806036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:cpep03011]
    111806036
   04121 Ubiquitin system [BR:cpep04121]
    111806036
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cpep04147]
    111806036
Ribosome [BR:cpep03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    111806036
  Archaea
    111806036
Ubiquitin system [BR:cpep04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   111806036
Exosome [BR:cpep04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   111806036
  Exosomal proteins of colorectal cancer cells
   111806036
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Plexin_RBD Dsc3_N TBK1_ULD UBL_UBAC1 DUF2604 Fer2_3 Ubiquitin_5 OTU1_UBXL
Other DBs
NCBI-GeneID: 111806036
NCBI-ProteinID: XP_023547140
LinkDB
Position
LG11:complement(103048..103758)
AA seq 156 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
NT seq 471 nt   +upstreamnt  +downstreamnt
atgcagatctttgtcaagacgcttaccgggaagactataactctcgaggtcgagagttct
gataccatcgacaatgtcaaggcaaagattcaggacaaggagggaataccgccggaccag
cagcgtcttatatttgccggtaagcagctggaggatggtcgaactcttgccgactacaac
atccagaaggagtccacgctccatcttgtgttaaggctccgtggtggtgctaagaagcgt
aagaagaagacctacaccaagcctaagaagatcaagcacaagaagaagaaggtcaagctc
gccgttcttcagttttacaaggtcgacgattctggaaaggttcagaggcttaggaaggag
tgccctaacgctgaatgcggagctggtacctttatggccaatcattttgatcgtcattac
tgtggcaagtgtggtttgacttacgtgtatcagaagcccggcggcgattag

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