Cucurbita pepo subsp. pepo (vegetable marrow): 111806130
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Entry
111806130 CDS
T05351
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111806130
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111806130
microRNA pathway
RISC loading complex
111806130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
DND1_DSRM
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
111806130
NCBI-ProteinID:
XP_023547257
LinkDB
All DBs
Position
LG11:complement(6646240..6665654)
Genome browser
AA seq
1641 aa
AA seq
DB search
MHNPEEENCDGARKRNFNDMESSVASDQTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAV
LETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQQFNVIKVQTDFEVAEYY
GAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNHP
YTKIMKEFYHKSDNKPKIFGMTASPVIRKGVSSSLDCECQIGELESILDSKIYAIEDKKE
VEIYVPSAKETCIFYEPAKSLTLELKAKIEALWSKFDTLLSNSQVALQVHYKDVDSKLKA
LKKRLSSDRFKISYCLDELGVLCAYEAIKVLLENVNIPNNEYELSRESSLQYKQFLEEEL
RVIGESFPLGNENIPNFGFDSQKAVDLGYISPKLFELLQLFESFGVSRQVLCLIFVERII
AANVIERFVKKVANLSHFTVSYVTGCNTSVGALAPKVQKETLELFRHGKVNLLFSTDVVE
EGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQSNSQYILLLERGNVKQREQLFDVIRSDR
SMTEAAMSRDPDACMLKPFSIMETDSYIVEATGASVTADSSVGLIHLYCKKLPGDKYFSP
KPIFQLSYGEGSYECRLILPPTAAFQTIVGPSTRNSNLSKQLVCLEACKKLHQMGALNDH
LLPSIEEISEFDMGLKCNASTSGAGTTKRKELHGRTAIRALSGTWGEKVEGATFQAYKFD
FSCSVIYEHFSGFVLLLESKLDDDVGNFELELYLISKMVKASVSFAGQVHLDAEQIMKAK
CFQELFFNGLFGRLLIGSKLTGKKRDFLLQKDTKPLWITSNMYLLLPVDSPDASSDDLWK
IHWTAIDSCVSVVEFLKKNSSLDAERNCGAISDSSPSRNCSAETESNAASLIHFANCVLD
VHSLKDRVVLAIHTGKIYSIVEVVNNTSAESPFDGNSDKAPPDYITFADYFNKRYGITLS
YPQQPLLRLKQSHNPHNLLVNFKDEGVTSDKLQSGSAVRKPQMHVHMPPELVLSMDVPKG
VLKSSYLLPSLMHRFESLMLASQLRKEINYHSNSLCISSSLILEALTTLGSCESFSFERL
ELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCKLQGYIRDSAFD
PRRWVAPGHCTLRPVPCKCGVDTAEVPLDDKFCSEDPKVVLGKCCDKGHRWLVSKTIADC
AEALIGAYYVDGGIIAALHVIKWLGIDADLDVALVVDAIASASLRSCNLKDTEIATLESK
IGYEFAVKGLLLEAITHTSDQELGVNYCYQRLEFLGDSVLDLLITWYYYQKYSDIDPGEL
TDLRSASVNNETFAQVAVRRNLQQHLQHCSGLLISQITEYVKYLSESHDAGKSLHGNKGP
KVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPLVTPDKLELPPLRELIELCDSLGYF
IKDKCTRKGEIFHAELRLQLQDVLLVGEGYERTRKASRGEAAQRLLVQLETRGISYSRSG
SKKRKQNPSCVEAAMVLSSSINCSTDACDPNSETPVIGPINLKKGGPRSTLFELCKKLQW
PMPTFNTVENKSRVLIDIGEGSERRKGFNSYLSNIILQIPNAGCIECKGDARADKKSSLD
SASLVMLEELRRRGRVVINDS
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgcataatcccgaggaggaaaattgtgatggtgctcgcaagagaaatttcaatgacatg
gagtccagtgttgcttctgatcagaccaacttcgataaacccatggacgagggcttcatt
cctagaaggtatcaaatggaggttttcgaagttgggatgaagagaaacaccatagccgtg
ttggaaacaggtgctggaaagactatgattgcagtgatgcttataaaagaaattggaaaa
gctatgaagtccagtggtgataagaagttcatcattttcttggctcccactgttcatttg
gttcaccagcaatttaacgttattaaagttcagactgattttgaagtggcggagtattac
ggtgccatgggggtcgatgattggaatatgaactgctgggagaaggaaacaagtgaacgc
gatgtactcgttatgaccccccaaattcttcttgatgcactgaggaaggcatattttaga
ctgggaacagtgtgcttgatgatcatggatgaatgccatcgtgctactggtaatcaccct
tatacgaaaatcatgaaggaattttatcacaaatctgacaacaaaccaaagatttttgga
atgactgcctcacctgttattagaaaaggtgtttcctcttccttggattgtgaatgccaa
ataggggagcttgaaagtatcttggattccaagatttatgctattgaagacaagaaagaa
gtggaaatatatgttccctctgcaaaggaaacatgcatattttatgaaccagctaagtct
ctaactttggagttgaaggcaaagatagaagccctgtggtccaagttcgatactttattg
tcaaactcacaagtggcattgcaagttcattataaagatgtagacagtaagcttaaggca
ctgaaaaaacggctatcaagtgatcgttttaagatctcttattgccttgacgaacttggt
gttctgtgtgcttatgaggcaattaaagttttattagagaatgtcaatattccaaacaac
gaatatgagctttctagagaaagttctttgcagtataaacagtttcttgaggaagaatta
cgagtaattggggaatcattcccacttggaaatgaaaatataccaaattttggttttgac
tctcagaaagctgtagatttgggctacatttctcctaaattgtttgaacttctccaactt
tttgaatcatttggagtatctaggcaggtgctctgtctcatatttgttgaaagaataatt
gccgctaatgttattgaaagatttgtgaaaaaagtagcaaatttatctcattttacggtt
tcatatgtgactggatgtaatacatcagttggtgcactggcaccgaaagtccagaaggag
acattggagttgtttcgtcatggcaaggtcaatctattattttccactgatgtagttgag
gaaggacttcatgtaccaaattgctcattcgtggtacggtttgaccttcctaagactgtt
cgtagttatgtacaatctcgaggtcgtgctcgacagagcaactcccaatatattttgtta
ctggagaggggaaatgtgaagcaaagagaacagctatttgatgtcataagaagtgaccga
tcaatgacagaggcagctatgagtagagaccctgatgcttgcatgttgaaacctttttca
attatggagacagattcttacattgtggaggcaactggggcatcagttactgcagattct
agtgttggtctcatacatctatactgtaaaaagctccctggtgataaatatttcagtcca
aaaccaatctttcaactctcatatggtgaaggatcctacgagtgtcggctaattttacct
cctacagccgcttttcaaaccatagttggtccttcaactaggaattctaatttgtctaag
cagcttgtatgcttggaggcatgtaagaagctacatcaaatgggtgcacttaatgaccat
cttctcccctctattgaagagatatcagaatttgacatgggtctgaaatgcaatgcatcc
acttctggagcaggaactacaaaaagaaaggaactgcacggcagaactgcgattagagcc
ttgtctggaacttggggagaaaaagttgaaggggccacttttcaggcttataaatttgac
ttttcctgcagtgttatatatgagcatttttctggatttgttcttctgttagaatcaaaa
cttgatgatgacgtgggaaatttcgaacttgaactttatttaatctcaaagatggttaag
gcttctgtatcttttgctgggcaagttcatttggatgctgaacagataatgaaagcaaag
tgctttcaggagctttttttcaatggattgtttgggagactgttaattgggtcaaaatta
actggaaaaaagagggattttttacttcagaaagacacaaaacctctttggattacatca
aacatgtatctgcttctaccagtagattcacccgatgcttcaagtgatgatttatggaaa
atacactggacagcaattgattcttgtgtttctgtggttgagtttttgaagaaaaactca
tctttggatgctgaaagaaattgtggtgccatatcagattcatcaccttctagaaactgc
tctgctgaaactgaaagcaatgctgcaagtttaattcactttgcaaattgtgtgctagat
gttcactccttaaaggacagggtggtattggctattcatactggaaagatctactcaatc
gttgaagttgtgaataatacatctgctgagagcccttttgatggcaacagtgacaaagca
ccacctgattacattacctttgcggactacttcaacaaaaggtacgggattacgctaagt
tacccacaacagcctctgttgcgtttaaaacaaagtcataaccctcacaatctacttgtc
aacttcaaggatgaaggtgttactagtgataagttgcaatctggctctgctgtcagaaag
ccacaaatgcatgtccatatgcctcctgaacttgtgcttagcatggatgtcccaaagggg
gttttgaagtcttcatacttgctaccatctttgatgcaccgttttgaatctttgatgtta
gctagccagcttaggaaggagattaattatcattcgaacagcctctgtatatcaagctct
ttgattttggaagcacttacaacccttgggagttgtgagagtttttcctttgagcggttg
gaattgcttggagattcagtattgaagtatgctgtgagctgccatctctttctcaagttc
cctgaaaaacatgaaggacagttatcttctcggcgccaacaggttatctgtaatgcaacc
ttacatgctctgggaacgaagtgcaagttacagggatacattcgtgattctgcatttgat
ccacgtcgttgggtggcaccaggacattgtactcttcgtccggttccttgtaaatgtgga
gtggatacagcagaggttcctttggatgacaagttctgctctgaagatcctaaagttgtt
ttgggtaagtgctgtgataagggtcataggtggttggtttcaaaaactatagccgactgt
gctgaagcccttataggcgcctattatgttgatggtggaatcattgctgcacttcatgtg
attaagtggcttggaattgatgctgatcttgacgtagcattagttgttgatgcaattgct
tctgcatctttgagatcctgcaatttgaaagatactgagatcgcaaccttagagtcgaaa
attggatatgaatttgctgtcaaaggattattgctggaggctataacacacacatctgat
caagaacttggtgttaattactgttaccagaggcttgagtttcttggtgactcagtgtta
gacttgctcattacatggtattattatcagaagtactcagatattgacccaggggagttg
actgatttacgttcagcttctgttaataatgaaactttcgctcaagtggctgtgagacgg
aatcttcagcaacatcttcaacattgttctgggcttctgattagtcaaattactgagtat
gtgaagtacttgtccgagtctcatgatgctggaaagtcactgcatggaaataaaggccca
aaggttcttggtgatatggtggaaagtattgcgggtgccatactgattgacacaaagctt
aatcttgacgaagtatggaaaatatataagccactattaactccattagtgacccctgat
aaacttgaacttccaccactccgagaactaattgaattatgtgattctctggggtatttc
atcaaagataaatgtactaggaagggagaaatttttcatgcagaacttagattacagttg
caagatgtcctattagtaggtgaaggatatgaacgaaccagaaaagcctcgagaggagaa
gctgctcaacgcttattagttcaacttgagacaagaggaatttcttactctcgttctggc
tccaagaagagaaaacaaaatcccagttgcgttgaggctgctatggttctctcatcatct
atcaactgttctacagatgcctgtgatcccaactccgagacccctgttattggaccaatc
aacttgaagaaaggaggaccacggagtactttgtttgaactatgcaagaaactgcagtgg
ccaatgccaactttcaatacagtagaaaataaatcaagagtcctaatagacattggcgaa
ggctcggagagaagaaaaggatttaacagttacttgtcaaatattattctgcaaataccc
aatgctggctgtattgaatgtaaaggtgatgccagagccgataagaagagctcgcttgac
tcagcatctctcgtcatgcttgaggaactccgacgacgaggaagagtcgttattaatgac
tcatga
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