Cucurbita pepo subsp. pepo (vegetable marrow): 111806163
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Entry
111806163 CDS
T05351
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111806163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111806163
03041 Spliceosome [BR:
cpep03041
]
111806163
03036 Chromosome and associated proteins [BR:
cpep03036
]
111806163
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111806163
Spliceosome [BR:
cpep03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111806163
Complex B
111806163
Complex C
U2 SnRNP specific factors
111806163
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111806163
TFTC complex
111806163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111806163
NCBI-ProteinID:
XP_023547305
LinkDB
All DBs
Position
LG01:1168798..1174023
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYNLTLQRATGIVSAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
FAAIELDYSEADQDFTGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSASMHKQKTMFFFLLQ
TEYGDIFKVTLEHNNDSVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAI
GDDADVESSSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSAPESLLFLEVLASVGGEDGADHPASLFL
NAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVILRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGNFLRVFTIERLGETFNETVIPLRYTP
RKFVLHPRRKLLVLIESDQGAFTAEEREAARKECFEAAGTGENGNGKMEMENGGDDEDKD
DPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQDNEAAFSVCTVNFHDKEYGTL
LAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAGI
GSVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYAGDIQESFHYCKYRRDENQLYI
FADDSVPRWLTASYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTVMGSLGALHAFTSRDDVDFFSH
LEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttacaacctcactttgcaacgagctaccgggattgtttcggctataaatgga
aatttctccggtggaaaaacacaggagatagttgtggccagagggaaggtcctggatctc
attcgtcccgatgatagtggtaagatccaaactctgctttccgttgaaatttttggtgcg
attcggtctttagctcaattcaggcttactgggtctcagaaagattatattgttgttggg
tctgattcggggcgaattgtcattctcgagtacaataaggataaaaatgtgtttgataag
atacatcaggagacttttgggaagtctggttgtcgtcggattgttccggggcaatatttg
gccgttgatcctaaagggagggctgttatgattggggcttgtgagaagcagaagctcgtt
tacgtgttgaatagagatactgtagcgaggcttactatttcttcgccactggaggctcac
aagtcacatacgattgtctattcaatttgtggaattgattgtggatttgacaaccctata
tttgctgcaattgagttggattactcggaggcagatcaagattttactggggtggctgca
agtgaggcccagaagcatttaactttttatgaacttgatcttggtctaaatcatgtctct
aggaagtggtcagagcctgttgataatggtgcgaatatgctagttactgttcctggtggc
ggagatggtccaagtggagtgttagtttgtgctgaaaattttgttatttataagaatcag
ggacatccagatgtgagagctgtcattcctaggcgtgcagacttacctgctgaacgtggt
gtgcttatagtttcagcatctatgcataagcaaaaaacaatgtttttctttcttttacag
acagagtatggagatatttttaaggttactttggaacacaacaatgacagtgtcaaagaa
ctgaagattaagtatttcgatacaattcccgttacagcttcaatgtgtgtgttgaagtct
ggattcctatttgctgcctcagaatttggaaatcactctctataccagttccaagcgata
ggggatgatgctgatgttgagtcttcctctgctactctgatggaaactgaagaaggtttt
cagcctgtctttttccagcctaggaggcttaaaaatcttgttagaattgatcaagtagag
agtttaatgccaataatggacatgaaagtcataaatctttttgaggaagaaacaccccag
atatttactctctgtgggcgtgggcctcgatcatctctgcgaatattgagacctggtttg
gccatcagtgaaatggctgtgtcagaacttcctggtgttcctagtgccgtttggactgtg
aaaaagaacatcaacgacgagtttgatgcatacattgttgtgtcatttgcgaatgcaaca
cttgttctttccattggtgagacagttgaagaagtcagtgatagtggatttctggacact
accccttcccttgctgtttctttgataggtgatgattcacttatgcaagtccatccgaat
ggcattaggcatattagggaagatggacgtattaatgaatggagaactccaggtaagagg
accattgttaaggttggctctaataggcttcaagtggtgattgccctgagtgggggagaa
cttatttattttgaggtagacatgactggtcagttgatggaagtggaaaagcatgaaatg
tctggagatgttgcctgtttggacattgccccagtacctgaagggagacaacgttctcgt
ttcctagcagttggttcttatgacaatacaatacgaattctatcattggatcctgatgac
tgtatgcagattttaagtgtgcaaagtgtttcttcagctccagaatctctcctatttctt
gaagttctggcatcagtaggtggggaggatggtgctgatcatcctgctagccttttctta
aatgctgctttgcattctggggttttattcagaacagtagtagatatggtgacaggtcag
ctctctgattcccgatcccggttcttaggtctaagagcacccaaactgttttctgttatt
ttgaggggtaggcgtgcaattctttgcctctcaagtagaccttggcttggttatattcat
caaggacattttcttttgacgcctctatcatatgaaactctggaatatgcttcctctttt
tcatcggatcagtgtgctgaaggtgtggttgctgtagcaggaaatttcttgagggttttt
accattgagagattgggagaaacatttaatgaaacagttattccactcaggtacactcca
aggaagtttgtgcttcatcctaggagaaaactattggttttaattgagagtgatcaggga
gcattcactgcagaagagcgagaagctgctagaaaagaatgttttgaggctgcagggact
ggagaaaatgggaatggcaaaatggaaatggagaatggaggagatgatgaggataaggat
gatcctttatctgatgagcattatggttacccaaaggcagagtccgaaaaatgggtttct
tgcatccgagttcttgaccctcggtcagccactacaacttgtctgctggagcttcaagac
aatgaagcggcattcagtgtttgtactgtgaatttccatgacaaggaatatggaactctt
ttagctgttggtactgcaaaagggctgcagtttttccctaaacgaagtttagttgctgga
tatattcatatttatcgttttctagaggatggaaaatccctcgagcttttgcacaagaca
caagtggaaggtgttcctctcgctttagctcagttccagggaagattactagcggggata
ggatctgtgctcagattgtatgatttggggaagagaagattgcttaggaagtgtgaaaat
aagttattccctaatacaattgtgtccattcagacatatcgtgatcgaatttatgctggt
gacattcaggagtcattccattattgcaagtacaggcgggatgaaaatcaactgtacata
tttgcggatgattctgttcctagatggcttacagcatcataccatgtggattttgatacc
atggctggtgctgacaagttcggaaatatctattttgtgcggttaccacaagatgtctcg
gatgagattgaagaagatccaacaggtggaaagataaaatgggagcagggaaagcttaac
ggggcacctaacaaagtcgaggagatcatacagtttcatattggtgacgtggtcacatca
ttgcagaaggcgtctttgattccagggggtggagaatgcattttgtacggtacagtgatg
ggaagcttgggggcattgcatgctttcacctcccgtgatgatgttgatttcttttctcac
ttggagatgcatttgagacaggaacatccacctttatgtggaagagatcacatggcttat
agatcggcttattttcctgttaaggatgtgattgatggggatctgtgcgagcagttccca
accctccccctggatttgcagagaaaaattgccgacgaactggaccgaactcccggagaa
atactgaagaagcttgaagaagtacgaaataagatcatttaa
DBGET
integrated database retrieval system
