Cucurbita pepo subsp. pepo (vegetable marrow): 111806177
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Entry
111806177 CDS
T05351
Name
(RefSeq) DNA mismatch repair protein MSH7-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111806177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111806177
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111806177
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
RT_RNaseH_2
Motif
Other DBs
NCBI-GeneID:
111806177
NCBI-ProteinID:
XP_023547322
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Position
LG11:complement(9233862..9243875)
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AA seq
1094 aa
AA seq
DB search
MQRQKSLLSFFQKSPSENRSSDGDTSSVAQRLTRFPAKPNVAGLEQPGIQTNADPSLEIR
GTDTPPEKVPRQILPVIEKNRGSSLFSSIMHKFVRVDDKHKAHDRDEIKKDSSQNEVWKD
SSQIPSISGKVNDPIELTELKGASRHHGKLHAANLNGHRGPVLDIESDDGIGGPETPGMR
PSASRLKRSQEIPLVDGNADFLQHSTKRIKLLQDSMNSNMIHHEVSDATSKFEWLNPCQI
RDADGRRPDHPLYDKKTLFIPPDVLKKMSASQKQYWNVKCQYMDILLFFKVGKFYELYEQ
DAEIGHKELDWKMTLSGVGKCRQVGVPESGIDDAVQKLVARGHKVGRIEQLESSDQTKTR
GANSVIPRKLVQVVTPSTKVDGDIGPDAVHLLSIKEESCGLDNNSIAYGFAFVDCAALKF
WTGSIKDDASCAALGALLMQVSPKEIIYEARGLSKETHKVLKKYSPTGSTALESTSGSPV
TDFLEASEVKLLIQSKGYFKGSLNLWNHTIESTVHDDIALCALGGLINHMSRLMLDDVLR
EGNVLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCVTSSGKRLLRLWIC
HPLKDVEEINNRLNVVEELMAQSEVMALLGTTYLRKLPDLERLFGQIKATVQSSASLVLP
LIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGCIISLSKVVKLPQLTSNGGLDQFLT
QFEAAVDSEFPNYQNHDVTDSDAERLSILIELFVEKATEWCEVIHALNCIDVLRSFAVIG
HSSRGSMSRPIILPQSSNSTSSPEKQGPVLQINGLWHPYALVENGESPVPNDMILGPDKD
GYHPHTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCETCTLSVVDTIFTRLGATDRI
MTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRL
LFATHYHPLTKEFASHPHVMLQHMACAFKDHELVFLYRLRSGACPESYGLQVATMAGIPG
RVVEAASKASQMLKKTIKESFKSSEQRSQFSTLHEEWLKTLIAVSEFRGNDLDENDAFDT
LFCLWYELKRSYHC
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagaaatctttgttatccttcttccaaaaatctccgtccgaaaatcggagc
tccgatggggatacctcctccgttgcccagcggctcactcgctttccggcgaaaccaaac
gttgccggtttggagcagccgggtatccagaccaatgcggatccctccctggagattaga
ggaaccgacacgccgccggagaaggtgcctcgccagattttgccggtgattgagaagaac
agaggttcttctctcttttcgagcatcatgcacaaatttgtgagagtcgatgataaacac
aaggcgcacgatagggacgagattaaaaaagattcctctcagaacgaggtttggaaagat
tcttctcagataccttccatttctggtaaggttaacgatccaatagaacttacggagcta
aagggagcttctagacatcatggtaaactccacgctgcaaatttaaatggacatagagga
cctgtcttggatattgaaagcgatgatggcattggtggaccagaaacacctggcatgcga
ccttctgcctcacgtttgaagagatctcaagagattcctcttgtggatgggaatgctgat
tttttgcagcatagtaccaaaagaattaaactccttcaggactcgatgaactcaaacatg
attcaccatgaagtttctgatgcaactagcaaatttgagtggctcaatccctgtcaaatt
agagatgctgatggtagaaggcctgaccatcctctttatgataaaaaaacattattcata
ccacctgacgtgctgaagaaaatgtcagcctcacaaaaacaatactggaatgtgaaatgt
caatatatggacattttgcttttcttcaaagtgggaaagttctatgagctatatgaacaa
gatgctgaaattggtcacaaggagcttgactggaaaatgacattaagtggtgttgggaaa
tgtaggcaggttggtgttcctgaaagtgggattgatgatgccgttcaaaagcttgttgct
cgtggacataaagttgggcgaattgagcagttggaatcttcagatcaaacaaaaaccaga
ggtgcaaattctgtgatacctcggaaattggtacaggttgttactccgtcaaccaaggtt
gatggtgatattgggcctgacgctgttcatttgctttccatcaaagaggagagttgtggg
ctggataataattcaattgcatatgggtttgcctttgttgattgtgctgctttaaaattt
tggactggctctatcaaagatgatgcttcctgcgctgctctcggtgccctcttgatgcaa
gtgtctccaaaggaaataatatatgaagctagaggattatctaaagaaacacataaagtt
ctaaagaagtactcgccaactggttccaccgctctagaatccacatcagggtcgccagtt
acagattttctggaagcttcagaggttaaacttttgatccagtctaaaggatattttaaa
ggctccttgaatttgtggaatcatacgattgaaagcacagtccacgatgacattgctcta
tgtgctctaggaggacttattaatcatatgtcaaggctgatgttggatgatgtcttgcgg
gagggaaatgtactgccataccaagtatacagaggctgtctaagaatggatggacaaaca
atggttaatcttgaaattttcagaaacaatgatgatggtggtttatcaggtacactgtac
aagtatcttgataactgtgtcacatcatcaggcaagcggcttttgaggttgtggatctgt
catcctcttaaagatgttgaagagattaataataggcttaatgtggttgaagaactgatg
gcacaatctgaagttatggcacttcttggtaccacctatctccgcaagcttccagactta
gagaggctgtttgggcagattaaggctacggttcagtcatctgcttctcttgtattacca
ttgattcgcaagaagttacagaaacggcgggtgaaattattcggatctttggtgaagggc
cttaggactggattggatttattaattcaagtccagaaggaaggttgcattatttctcta
tcaaaagtagttaaactgccacagctcaccagcaatggtgggctcgatcaattcctcact
caatttgaagcagctgtagatagtgaatttccaaattatcagaaccatgatgtaacggat
tccgatgctgaaagactctctatattaatcgagttatttgtggaaaaagctactgaatgg
tgtgaagtaattcatgccctcaattgtattgatgtgctgagatcatttgcagtaattggt
cattcatctagagggtccatgtctagacctattattttgcctcaatcgagtaattcaacg
tcgagtccagaaaagcaggggccagttcttcaaattaatgggctatggcatccatatgcc
cttgtggagaacggagaatcaccagttcctaatgatatgatccttggtcctgataaagat
ggctaccatccccatactctactgctaacgggaccaaacatgggcgggaaatcaacactt
cttcgttctacttgtctagctgttattcttgcacagttgggttgctacgtgccttgtgag
acatgcacgctctcggttgtggataccatctttacgagacttggtgctacggatcgaatc
atgacaggagaaagtaccttccttgttgaatgctcagaaacagcttcagttctccaacat
gctactcaggactctcttgttattcttgacgaactcgggcgaggaacgagcacatttgat
ggctatgccattgcatatgctgtgtttcgccatctgatagaaaaggtgaactgtcgactt
ctatttgctactcactaccaccctctaacaaaggagtttgcctctcatcctcacgtcatg
cttcaacacatggcctgcgcattcaaggaccatgagctggtttttctatatcgcctccgc
tccggagcatgccctgagagctacgggttgcaagtagcaaccatggctggaatcccgggg
cgagtcgttgaagcagcttcaaaagctagccaaatgctgaagaaaaccatcaaagagagc
ttcaaatcaagcgaacaacgctcacagttttcaactcttcatgaagagtggttgaaaact
ctaatcgcggtctcggagtttcgaggtaatgatctcgacgaaaatgatgcttttgatact
ttattttgtttatggtatgagcttaagagatcatatcactgctag
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