Cucurbita pepo subsp. pepo (vegetable marrow): 111806385
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Entry
111806385 CDS
T05351
Name
(RefSeq) coatomer subunit beta'-2-like
KO
K17302
coatomer subunit beta'
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpep04131
]
111806385
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpep04147
]
111806385
Membrane trafficking [BR:
cpep04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
111806385
Exosome [BR:
cpep04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
111806385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_RIG_2nd
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_Aladin
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_Nup120_160
WD_LRWD1
TPR_1
Motif
Other DBs
NCBI-GeneID:
111806385
NCBI-ProteinID:
XP_023547445
LinkDB
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Position
LG12:6637360..6649976
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AA seq
917 aa
AA seq
DB search
MPLRLEIKRKLAQRSERVKSVDLXFFFFFFNISIWILASLYSGTVCIWNYQSQIMVKSFE
VTELPVRSAKFIVQKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV
LSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS
PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA
VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKGSRRVVIGYDEGT
IMVKLGREVPVASMDNTGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDL
YPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSSDGEYAARESTSKIKI
FTKNFQEKKSIRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADS
GDLVAISSDSAFYILKYNRDVVSSYLDSGRSVDEQGAEDAFELLHETSERVRTGLWVGDC
FIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASHSRVYLVDKEFNVVGYTLLLSLIE
YKTLVMRGDLERASEILPSIPKEHHNSVARFLESRGMVEEALEVATDPDYRFELAIQLGK
LDVAKEIAMVVHSEPKWKQLGELAMSTGKLEMAEECLNFAMDLSGMLLLYSSLGDVEGIS
KLASLAKEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIW
RKDLNKVNPKAADSLADPEEYPNLFDDWQLAISVESKFSETRGVYPSAVEYANQAERSHT
TLVEAFRNMPMDEEELLENGNSNLENGDEETAEIQNGQNSQEDPVVVDADSTDGAVLVNG
NEDDEEWGTNNEGTQSA
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcagactagaaatcaagaggaaactcgctcaaagatcggaaagggtaaaatct
gtggatttgcntttttttttttttttttttaacatttctatctggattttggcgagtttg
tattcgggaactgtatgcatttggaactatcagtcccagatcatggtcaagtcttttgag
gtcactgaattaccagttaggtcagccaagtttatcgtgcagaagcaatgggttgttgct
ggagctgatgacatgttcattcgtgtttacaattataatacaatggataaggtaaaagta
tttgaggctcatacagattacattaggtgcgttgcagtccatcctacacttccatatgtt
ctgtcatcatctgatgatatgctcataaagctttgggattgggaaaagggttgggtgtgc
actcaaatttttgagggacattctcactatgtaatgcaagtaacatttaatcccaaggat
actaacacctttgcaagtgcttctcttgaccgcaccattaagatttggaatcttggatct
cctgatcctaattttacattggatgcccatcagaagggtgtaaattgtgttgattacttt
actggcggcgacaaaccctatctaattactggttcggatgatcacactgctaaggtgtgg
gactatcaaaccaaaagttgcgttcaaacgcttgaaggtcatacgcacaatgtttctgct
gtttgtttccatccagaacttcctattattatcacaggttctgaggatggtactgttcgt
atatggcatgcaaccacttataggcttgagaacaccttgaattatggccttgagcgagtt
tgggctattggatatattaagggctcccgacgggttgtgattggttatgatgaaggaacg
attatggtaaaacttggccgggaggtacctgtagctagcatggataatactggtaaaatt
atttgggctaagcacaatgaaattcaaacagtgaatattaagagcgtgggagcagactat
gaggttacggatggggagaggttgcctttggctgtcaaggaattggggacctgtgatcta
tatcctcaaagcttaaagcacaaccccaatggacgatttgttgttgtatgtggagatggt
gaatatattatctatacagctttggcatggaggaataggtcatttggttcagcattggaa
attgtttggtcatctgatggagaatatgctgctcgagagagcacttcgaagataaagatt
ttcacaaaaaatttccaggaaaagaagagcatccggcctacattctctgcagaacgtatt
tatggaggaacacttttagcaatgtgctcaaacgattttatttgcttttatgactgggct
gagtgccggttaattcgacggattgatgtaaatgtgaaaaatctctattgggctgatagt
ggtgacctagtggcaatttccagtgattcagcattttatatcctgaagtacaatcgcgat
gttgtttcctcttatcttgatagtgggagatcagttgatgaacaaggtgctgaggatgct
ttcgagcttctgcatgaaacaagtgaacgtgttaggactggcttatgggttggggattgt
ttcatttataataattcttcttggaggcttaattactgtgttggtggtgaggttacaaca
atgtttcatctggatcggcctatgtatttacttggatatcttgccagtcacagtcgtgtg
tatttagtggacaaagaatttaatgttgtaggatacacattacttcttagcttgattgaa
tacaagacacttgtaatgcgtggagatctggaaagagccagtgaaattttgccttcaatc
cccaaggagcatcataatagtgtggctcgctttttagaatctcgaggtatggtagaagag
gcactggaggtagcaacagatcctgattatagatttgagttagccatacaacttggtaaa
ttagatgttgcaaaggaaattgcgatggttgtgcatagtgaacccaaatggaagcaactt
ggagaattagccatgtctactggaaagctagaaatggccgaggaatgtctaaattttgcc
atggacctgagtggtatgttactgctatattcttctttaggagatgttgaaggaatatcg
aagcttgcttcccttgctaaagagcaaggaaagaataacgttgccttcctctgtttattt
acattgggtaaattagaagactgcctccagctattggtggaaagtaatcgtatacctgaa
gctgcattaatggcgcgatcttatcttccaagtaaagtctctgagatagttgctatctgg
agaaaggacttgaataaggtcaatccaaaagccgctgattcactagctgatcctgaagag
tatcctaatctgtttgatgattggcaactagctatttctgttgaatctaagttttcagag
accaggggtgtttatccttctgcggtggagtatgctaatcaagctgagaggtcacataca
acacttgtggaagcttttaggaatatgcccatggatgaagaggagctccttgaaaatgga
aattcaaatcttgagaatggagatgaagagactgcagagatccaaaatggacaaaacagc
caagaggatcctgttgtagtggatgctgattcaacagatggtgccgttcttgttaacggc
aacgaggatgatgaagagtggggtacgaataacgaaggaacccagtcggcctaa
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