Cucurbita pepo subsp. pepo (vegetable marrow): 111806402
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Entry
111806402 CDS
T05351
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cpep01009
]
111806402
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111806402
Enzymes [BR:
cpep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
111806402
Protein phosphatases and associated proteins [BR:
cpep01009
]
HAD phosphatases
Fcp/Scp phosphatases
111806402
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111806402
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
BRCT
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
111806402
NCBI-ProteinID:
XP_023547466
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Position
LG12:complement(9746221..9752520)
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AA seq
1256 aa
AA seq
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MGKDGSVKIEGVEEGEVSYTASVEEISEEDFIKLESGPKVVLPKDSNRETRVWTMSDLYK
NYPTMRHGYASGLYNLAWAQAVQNKPLNDIFVMETDPEEKSKQPSSSPSANGKGDGDSEE
DRVLIDVSGDEMNCDNSNGEREEGELEEGEIDMDTEFMEEAVDSKAMLSDSHSMNDSDGQ
ELDLMTKELDDQLKLIQKTLDGVTIDAAQKSFLEVCSQLQSSIEMFLELLQVKVVPRKDA
LIQRLYAALRIINSVFCSMSLNEKEEYMQHLSRLLSYVKNCDPPLFSPEQIKSVEVKMPS
TDSLFHLSSMRASAKEVEIHMPNGVKNKDSYSAYTNAGQHLTSSTKFPSNSMPVGITAKN
SLNILSEGLQSGVSSLKGRAPLLPLLDLHKDHDADSLPSPTKEAPTIFSVQKSGNTPAKL
AFAVDGSRLHHYETDAHKAVSTYQQKFGRSSFSMADRLPSPTPSEEYDGGGDIGGEISSS
SIIRSLKSSNSSKPGQNVSNSASNISTGLFSSLESSSTKGLISPLNVAPPSSVSDPTVKP
LAKSRDPRLRIVNSDASAMGLNPRTMTSVQNSSMLECAAAINLRKQKMDLEPNTGVPEIK
RQKIGSQNHAVAASDVRALPGSGGWLEDTMPAGPRLLNRNQMEIAEANATEKINVTNNSS
PGNEGLPTINASNDASLPSLLKDIVVNPTMLLSLLKMNQKQQLAAELKSKSSESEKNTIY
PTSLRPCQGSSPLINAPAVTSGILQQLAGMPSVPIVVAESHQDDLGKVRMKPRDPRRILH
GNSPHNVGSLGNDQLKGVVPTTPNSEGCKDIPNGHKQESQGDLKLASSPTLLPDIGRQFT
NNLKNIADIMTVPSPPTSQNSSSKPVKLGRMDTNVVGSSSIDNKVVTTATQEGDMVGPSR
SQGTWGDLEHLFEGYDDKQKAAIQRERARRIQEQKKMFAARKLCLVLDLDHTLLNSAKFV
EVDPVHDEILRKKEEQDREKALRHLFRFPHMGMWTKLRPGVWNFLEKASELFELHLYTMG
NKQYATEMAKVLDPKGSLFAGRVISRGDDVDLVDGDDRIPRSKDLEGVLGMESAVVIIDD
SIRVWPHNKMNLIVVERYTFFPCSRRQFGLLGPSLLEIDHDERPEDGTLASSLAVIQRIH
QTFFSHPALDEVDVRNILASVQQKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVC
TNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgggagtgttaaaattgaaggcgtcgaagaaggggaagtctcttataca
gcttcggtagaggagatcagtgaggaggattttattaagcttgaatctggtcctaaggta
gtgcttcccaaagattccaatcgggaaactagagtttggaccatgagtgatttgtataag
aattatcccaccatgcgtcatggttatgcttccggtttgtacaatcttgcttgggcacag
gccgtgcagaataagcctctgaatgatattttcgttatggagaccgaccccgaggagaaa
tctaagcagccgtcttcctctccttctgcgaatgggaagggtgatggtgatagtgaagag
gatagagtcctgatcgatgttagcggtgatgaaatgaattgcgataattcaaatggcgag
agagaggaaggtgaattagaggagggtgagattgatatggatacggagttcatggaagag
gctgttgattccaaagcaatgttgtccgacagtcattctatgaatgatagtgacggtcag
gaacttgatttgatgactaaggagttggacgaccaactgaaactgattcagaaaacattg
gatggtgttacaatcgacgcggcacagaaatcgtttctggaagtttgctcccaactacag
agttctatagagatgtttttggaattgctccaggtaaaggtagtcccgagaaaggatgcg
ctcattcaacggttatatgctgctcttcgaataatcaattctgtgttctgttccatgagc
ctcaacgaaaaggaggagtacatgcaacatttgtcgaggttgctttcttatgttaaaaat
tgcgatcctcctctcttttctcctgagcagataaaatcggtagaggtcaaaatgccatct
acagattccctcttccatttgtccagcatgagagccagtgctaaagaggtcgagatccat
atgcctaatggggtgaaaaataaggattcctattctgcatatacaaatgctggtcaacat
ttgacttcttcaactaaattcccttcgaactccatgcctgtagggattacagcaaaaaat
agcctaaatatcttatcagaaggtttgcaatctggggtatctagcctaaagggtagagcc
cccctactccctctgttagaccttcacaaggatcatgatgcagacagtctcccgtcgcct
actaaagaagctcctacaattttttctgtccaaaaatcagggaatacccctgcaaaattg
gcctttgctgtagatggatctagattgcatcattatgaaactgatgctcataaagctgtt
tcgacctatcaacagaagtttggtcgaagttccttttcaatggctgatagacttcctagt
ccaactccttctgaagaatatgacgggggtggtgatattggtggggagatttctagttct
tccattatcagaagtctaaagtcttcaaattcttctaaaccgggtcaaaatgtatcaaac
tctgcttctaatatatctaccggtctgttttctagcttggaaagttccagcactaaagga
ctgattagtcctctaaatgttgctcctccaagttctgtgtcagatccaacagtaaagcct
ttagcaaaaagtagggaccctaggctacgaattgtcaattctgatgcaagtgcaatgggt
cttaatccacgcacaatgacttcagtgcagaattcttctatgttagagtgtgctgcagcc
ataaacttgagaaagcaaaagatggatttggagcctaatacaggtgtccctgaaataaaa
aggcagaagattggatctcagaatcatgcagtagctgctagtgatgtgagagctctccct
ggaagtggtggctggttggaagataccatgcccgctggacccagacttctaaataggaat
cagatggagattgctgaagcaaatgcaactgaaaaaatcaatgttacaaacaattctagt
cctggaaacgagggcttgcctactataaatgctagcaatgatgcttccttgccctcactg
ttgaaagatattgttgtgaacccaaccatgctcctaagtttacttaaaatgaaccaaaag
cagcaattagctgctgaattgaaatcaaagtcgagtgaatctgaaaaaaatacaatttat
cctacgagcttgcgtccttgccaaggatctagtccacttataaatgctcctgctgtgacc
tcaggaattttgcagcaattagcaggaatgccaagtgtaccaatagtggttgctgagagt
catcaggatgatttaggaaaagttcgtatgaaacctcgtgaccctcgccgtatcctccat
ggtaattctcctcataatgttgggagcttgggaaatgatcagttaaaaggagttgtacca
actactccaaactcagaaggatgtaaggacataccaaatgggcataagcaggaaagccag
ggagatttgaaattagcttcttcaccaacattactacctgatattggtagacagttcact
aacaatctgaaaaatattgctgacattatgactgttccctcgccacccacttcacagaat
tcatcatcaaagccagttaaattgggcaggatggatactaatgttgtagggtcaagctct
atagacaataaagttgtgacaactgctacccaagaaggagatatggttgggccctctcgt
tcacagggtacatggggagatcttgagcatctatttgagggctacgatgacaagcaaaaa
gctgctatccagagggagagggcaagacgaatacaagagcagaaaaaaatgtttgctgca
cgcaaactctgccttgtattggatctagatcacacacttctgaattcagctaagtttgtg
gaagtagatccagtgcatgatgaaattttgagaaagaaagaggaacaggatcgtgagaag
gcactgagacatcttttccgatttcctcatatgggaatgtggacaaaactacggcctggg
gtctggaactttctggaaaaggccagcgagctctttgaactgcatctgtacacaatggga
aacaagcaatatgcaacagagatggcaaaagtgcttgatccaaaagggtctctgtttgct
gggcgagttatttctcgaggtgatgatgtagacttagtggacggtgatgacaggataccc
aggagtaaggatctggagggtgttttgggcatggagtctgctgttgttataatagatgat
tccatcagggtgtggccacataacaaaatgaacttgattgttgtagaaaggtatactttc
tttccatgtagtaggcgccagtttgggcttctggggccttctcttctagagattgatcat
gatgagagacctgaagatggtactttggcatcttcactggcggttatccagagaatccac
caaacttttttctcccatcctgcattagatgaagtagatgttagaaatatcttggcctcc
gtgcaacaaaagattttggctggttgccgtatagtgttcagcagggtttttccggttggt
gaagcaaatccgcatctgcatccactgtggcagacagcagaacagtttggcgccgtgtgc
accaaccagattgatgaacaggttacccacgttgttgcaaattctcttgggactgataag
gtgaattgggctctctccacgggaagattcgtggtccatccagggtgggtggaagcatca
gctctgctttaccggagggcaaatgagcaggacttcgccattaaaccataa
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