Cucurbita pepo subsp. pepo (vegetable marrow): 111806667
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Entry
111806667 CDS
T05351
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpep03016
]
111806667
Enzymes [BR:
cpep01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
111806667
Transfer RNA biogenesis [BR:
cpep03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
111806667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
Methyltransf_25
Methyltransf_12
Methyltransf_31
Methyltransf_11
Motif
Other DBs
NCBI-GeneID:
111806667
NCBI-ProteinID:
XP_023547814
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Position
LG12:complement(7583467..7586276)
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AA seq
470 aa
AA seq
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MKAVPVSEELGLEMASRCQFWLPKKNRFCANSPINDSKFCGNHSSRADTQWVPCPVDPSH
SVLRENLEWHVKRCPLLKQTQSLAVQPFYQKGINAGEEDSISSDELASGFSDSISSEMKR
NIVYGMSGAEFHRLLAKIRALHGLICKDIQDSYRIKEACNMWIKGEIDRKIPFQEKHVLQ
QASILGNMEEFGVLRNYDGGEQCEGNRSCGNEANVAPAVIEFGAGRGYLTQMLADCYGIK
RVLLVERKSYKLKADRSLRQKESLVLERLRIDIEDLNLNAVESLRHNPYLAIGKHLCGPA
TDLALRCCLTKQSNHVNTEQCGDRPKLRGLAIATCCHHLCQWKHYTNKRYLLELGITKEE
FLAITWFTSWAVDANHSEDISDGADLKTFLQSSENEGDGMNGSTVEDIARHMNPVERAVL
GFMCKEIIDMGRLMWLKECGLETQLVKYVPSSISPENHLLIAKCRNICAA
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcagtgccggtgagtgaagaattaggtttagaaatggcttcccgttgtcagttt
tggcttccaaagaagaacagattctgtgcgaattctcccattaacgattccaagttttgt
ggtaatcatagctcgagagctgatactcagtgggttccatgtcctgtagacccgtctcac
tctgtgcttcgagaaaatcttgaatggcatgtaaagaggtgtccgttattgaaacaaact
caatccttggctgtccaaccgttctatcaaaagggcatcaatgctggggaggaggattcg
atatcgtccgatgaattggcttcgggcttttcagatagcatttcctctgaaatgaagagg
aatatcgtttatggtatgtctggagctgaatttcatcggcttcttgcaaagattagagct
cttcatgggctgatatgcaaggatattcaagactcttataggataaaggaagcttgcaat
atgtggattaaaggagaaatagataggaaaattccatttcaagagaaacatgttctgcag
caggcgtcgattcttggaaacatggaggaatttggagtgctgaggaattatgatggaggg
gaacaatgtgagggtaacagatcgtgtggcaatgaggctaatgttgcccctgcggtaatt
gagttcggggcaggaagaggctacttaactcaaatgcttgcggattgctatggtataaaa
agggtgcttctggttgagcggaaatcgtacaaactgaaggctgatcgatcactgcgacag
aaggagagcttggttttagagcgtttgcgaatcgacattgaggatctaaacctgaacgct
gttgaatctttgaggcataatccttacttggccattggcaagcatctctgtgggcctgca
acagatttggctctcagatgttgtcttaccaaacaatccaatcatgtcaatactgaacag
tgcggagataggccgaaattgagaggtttggctatagcgacatgttgtcatcacctttgt
caatggaagcattacacaaataagagatacttattagaactcggaatcacgaaagaagaa
tttcttgctattacatggttcactagttgggcagtggatgctaatcacagtgaagatatt
tcagatggtgccgacttgaaaacgtttcttcaatctagtgaaaatgaaggcgatggaatg
aacggaagcacggtagaagacattgctagacatatgaatccagtggaaagagcagtcctg
ggatttatgtgcaaggagattattgatatgggaagactaatgtggctcaaggaatgtggc
ttggaaacacagcttgtcaagtatgtcccatctagcatctcccctgaaaaccatttactt
attgctaaatgcagaaatatttgtgctgcttag
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