Cucurbita pepo subsp. pepo (vegetable marrow): 111806797
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Entry
111806797 CDS
T05351
Name
(RefSeq) nuclear poly(A) polymerase 4-like
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111806797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111806797
Enzymes [BR:
cpep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
111806797
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
111806797
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
111806797
NCBI-ProteinID:
XP_023548038
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Position
LG12
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AA seq
754 aa
AA seq
DB search
MGRAEGLVNSPLPANQAVPKCCGVTKPISVAGPSDTDVQRNKELEKFLVDAGLYESKEES
AKREEVLSRIGQIVKDWVKQLTRIKGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLC
VGPSYVNREDDFFYLLHNMLEEMEEVSELQPVPDAHVPVMKFKFDGISIDLLYASISRLV
VPEDLDISDVSVLYNVDEPTVRSLNGCRVADQILKLVPNIENFRTALRCLKFWAKRRGVY
SNVTGFLGGVNWALLVARVCQLYPNAVPSMLLSRFFRVYTLWRWPNPVMLCAIEEDDLGC
SIWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKVCEEIELNKAQ
WSSLFEPYLFFESYKNYLQVDIVAADADDLRSWKGWVESRLRHLTLLIERKTEGKLQCHP
YPHEYVDTSKPCAHCAFFMGLQRKQGEVIQEGQQFDIRSSVDEFKHYINTYMFWKPGMEI
FVSHVRRRQIPPFVLPEGHRRSRASRLSASQRSDGPNHEDIHNCRSGSGEKYLKRKNDPA
RIEGEHDHPQKRRSISPRKQDSVSSNISHFSNSSSECPEADVETKTIDEKNNITQENEEL
AFRGPSIGSSSSGRESRSVESDKGSTAEMFEPDKVPCTEIDRRCASNSSVVTTLTSESSS
CENVGFTSAAGSSEGNVGSIEGSADECNNPETPVVDSCEADSELQLENSCVNGDSMHMEP
EPNAVLEMALNPGGGVQSKTIQNPVIRLSMASIA
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggggagagcagaggggttggttaattcaccattacctgctaatcaagcggtgccgaag
tgctgtggtgtgacgaagcctatatcggtggcggggccttctgatactgacgtgcaaaga
aacaaggagcttgaaaagtttctggtcgatgctggcttgtacgaaagcaaagaggaatct
gccaagagagaagaggttctttcccggataggacagattgttaaagactgggtaaagcaa
cttactcgaattaaaggttatacggatcaaatggtggaggatgcaaatgcggtgatcttc
acttttggctcctatcgtcttggggtgcatggacctggagctgacatagacacgctctgc
gttgggccatcttatgtgaacagggaggatgatttcttttatttattacataatatgttg
gaagaaatggaagaagtgtctgagttgcagcctgttcctgatgctcatgtcccagtgatg
aaattcaaatttgatggaatatctattgacctactttatgctagtatatctcgtctggtt
gtgcctgaagatttggatatctctgatgtgtctgtgctgtataatgttgacgagcctact
gttcgaagtcttaatggttgtcgggttgctgatcaaattctaaaacttgttccaaatatt
gagaattttcgaactgcacttaggtgcttgaagttttgggccaaaaggcgtggtgtttat
tcaaatgtgactgggtttcttggtggcgtaaactgggcacttcttgtagcacgagtgtgt
cagctttatccaaatgcagtacccagtatgctattgtctcgatttttcagagtttacact
ctgtggcgttggccgaaccctgttatgttgtgtgcaattgaggaggatgatcttgggtgt
tctatatgggatcctcgtaaaaatcctcgcgatagaactcatcatatgcccattataaca
cctgcatatccgtgcatgaattctagctacaatgtttctacaagtacgctccgagttatg
atggaacagttccagtttgggaataaagtttgtgaggaaattgagctgaataaagcgcag
tggagttctctttttgagccatatttgttctttgaaagctacaaaaactatttgcaagtt
gatatagtagcagctgatgcagacgatctacgcagttggaaaggatgggtagaatctcgg
cttaggcacttgacattattgattgagaggaagacagaagggaagttacagtgtcatccg
tatcctcatgaatatgttgacacatccaagccatgtgcccattgtgcgtttttcatgggt
ctgcagaggaagcagggagaggtcattcaagaaggccagcagttcgatatacgttcgtca
gttgatgaattcaagcattatataaatacgtacatgttctggaaaccaggaatggaaatc
tttgtttctcatgttcgtagaaggcagattcctccttttgtgcttccagaaggtcataga
cgatctcgtgcttcaaggttgtccgcttcgcaacgttctgatgggccaaatcatgaagat
atacataattgtaggagtggcagtggtgaaaaataccttaagagaaaaaatgatcccgct
cgaatcgagggggagcatgatcatccccaaaagcgacggtctattagtcctagaaagcag
gattcagtttcatctaatatcagtcatttttcaaatagttcttctgagtgtccggaagct
gacgttgaaactaaaactattgacgagaagaataatatcactcaggaaaacgaagagttg
gcttttcgtggccctagtattggtagcagttcttcagggagagaatctagaagtgtagag
agtgacaaagggtctactgcagagatgtttgaaccagacaaagttccttgtacagaaatc
gatcgcagatgtgcatctaattccagtgtggtcactaccttaacaagtgaaagcagttcc
tgcgagaatgttgggttcacatcagcagcaggtagtagtgaaggcaatgttgggagcata
gaaggaagcgcggatgaatgtaacaacccagaaacaccggttgttgattcgtgcgaggca
gattccgaacttcagttggagaatagctgtgtaaatggagatagcatgcatatggagcca
gagccaaatgctgtgcttgagatggcattaaatcctggaggtggggttcagtctaaaacc
atccagaacccggtgataaggttgagtatggcctcaatagcttga
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