Cucurbita pepo subsp. pepo (vegetable marrow): 111806875
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Entry
111806875 CDS
T05351
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111806875
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111806875
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
90S particles
Helicases
111806875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_22
nSTAND3
ATPase
AAA_19
AAA_23
PhoH
AAA_RNF213_3
Motif
Other DBs
NCBI-GeneID:
111806875
NCBI-ProteinID:
XP_023548152
LinkDB
All DBs
Position
LG12:7898870..7906900
Genome browser
AA seq
1321 aa
AA seq
DB search
MEDLVNDQLDCGKGSWSMDGGGSNQVILYGSKKSDKKRKNMNKGCKGTQINKKPKLSKSQ
KKKMMKLEEEKEKSLLLSKSLETLEKYKIPDDAFLLLRSSVNIGQDETRLEKRSRDIQFS
KVGIEFPRNEQQWEKTCSDTSQDESHLGSLEISPRHQLSAEADEDCPCIEKREVSCGLDS
FQDLDSGNVVSNQGKSLSALPDEVENICAVVLESGRDLSCTPCTDGDFKGPEIMDKRDEI
PKVEICTTSDPLPELRLLSRPIVVPVSRPCEVEDKRKDLPIVMMEQEIMEAINENPIVII
CGETGCGKTTQVPQFLYEAGFGSLQSSHQRGTIGVTQPRRVAVLATAKRVAYELGVHLGK
EVGFQVRYDKKIGGSSSIKFMTDGILLREVQHDFLLKRYSVLILDEAHERSMNTDILIGM
LSRVVKLRQDLHMKQRQIMLSGGEISPEDMIFPLKLVLMSATLRVEDFISGGRLFHVSPP
VIEVPTRQYPVTVHFSRRTDTVDYIGQAYKKVLAIHKKLPPGGILVFVTGQREVENMCKK
LREASKKLIKKTSERNVGIGNGAIEMNSIQNLDMKEINEAFEDHEFSAGEQTDRFSSCDK
DEFDVNDDASDASYNSETDSELEFSEDDALFDEDDGNLTDVLREDASMASLKAAFDALDE
KVAFDKIQVDHSTKGELPAKRVSARMKENGELGFLVGALHVLPLYAMLPAAAQLRVFEEV
KEGDRLVVIATNVAETSLTIPGIKYVVDTGREKVKTYNSSNGIENYEIQWISKASAAQRA
GRAGRTGPGHCYRLYSSAVFSNIFPDFSLAEIAKIPVDGVVLLMKSMGISKVVNFPFPTP
PETSAVLEAESCLKALEALDNDGRLTPLGKAMARYPLSPRHSRMLLTVIQIMRNLKTYDR
ANLVLAYSVAAAAALSTSNPFVMMFEGSQVKDDLEQYDRSLELADTKAEEKVEKSLKKKL
KEAGKLSREKFSNPTSDALTIAYALQCFELSESPVAFCNTHTLHLKTMQEMSKLRKQLLQ
LVFNHSGSAIADSDFSWTNGTLEDVENVWRIPSNKHPLSLNEEEIIGQAICAGWPDRVAK
RIREISKSTEDDRKERTGKYQACMVKENVFLNRRSSVSRSAPEFLVYNELLCTKRPYMHG
LTSVKPNWLVKYASSLCTFSAPLTDPRPYYDPQNDTVFSWVAPTFGPHLWKLPLHNAPIK
DNAHGVAVFACALLEGNVLPCLKYVRKFMAAPPSSILRPEALGQKRVGNLLSRLKSKKIN
SCATLRVVWKDNPYELHSEILDWFQESYHSHFEDLWSQMLCEVQEPPERLSRKLKRAKKK
F
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccttgtcaatgatcagctagattgtgggaagggttcatggagtatggatggt
ggtggtagcaatcaagtcatcttgtatgggagtaaaaagagcgataagaagagaaaaaac
atgaataagggatgtaaaggcactcagataaataaaaaaccaaagttgagcaagtcgcag
aaaaaaaagatgatgaaattggaggaggagaaggaaaaatcacttttactgtcgaaaagc
ttggagacattagagaaatataagattccagatgatgcatttcttcttttgcgatcttct
gttaatattggtcaggatgaaacaagattggaaaaacgtagcagagatatacaattttct
aaagtaggaatagagtttccaaggaatgaacagcagtgggagaaaacttgctccgacaca
tcacaagatgaaagtcatcttggatctcttgaaatttctccgaggcatcaactttctgcc
gaggctgatgaggattgcccttgcatagaaaaaagagaagtttcatgtggtttggattcc
tttcaagatctggacagtggtaacgtagtctctaatcaaggaaaatccctttctgccttg
ccagatgaagttgaaaatatttgtgcggttgtacttgaaagtggaagagatttatcttgc
actccctgcacggatggtgactttaaaggacctgagataatggataagagggacgaaatt
ccaaaggtagaaatttgtacgacatctgacccgcttccagaattgaggcttttgtctagg
ccaattgtggtgcctgtatcaaggccatgtgaggttgaagacaaacgaaaagatctccca
atagtcatgatggagcaagagattatggaagctataaatgagaaccccatagttattata
tgtggagagactggttgtggcaaaacaactcaagttcctcagtttctgtatgaagctggc
tttggttcattacaatctagtcaccagagaggtaccattggggtaactcaacctcggcgt
gttgctgtacttgccactgctaagcgtgttgcatatgagcttggtgttcatctaggcaaa
gaggttggctttcaagtaagatatgacaagaaaattggaggtagtagctcaatcaagttc
atgactgatggaattttacttcgcgaagttcagcatgattttttattgaagcgttactct
gttctaattctcgacgaggcgcatgagaggagtatgaacactgatatattaattggaatg
ctgtcacgtgttgttaagcttcgtcaggatttgcatatgaaacaacgacagataatgctt
tcaggaggagaaattagtcctgaagatatgatttttccattgaagttggtgcttatgagt
gctaccttgcgagtggaagatttcatctctgggggaaggttgtttcatgtttcacctccc
gttatagaagttcccactagacaatatccagtaactgtacatttctcgaggagaacagat
acagttgattatattggtcaagcatataaaaaagttctggcaattcacaaaaagcttcca
cctggaggtatactcgtcttcgttactggacagagagaagttgagaatatgtgcaagaag
cttcgggaagcctcaaagaagttgattaaaaaaacatctgaaagaaatgttggaattggc
aatggtgctattgaaatgaattcaattcagaatttagatatgaaggagattaatgaagca
tttgaagatcatgaattttcagctggtgagcaaacagatcgatttagctcttgtgataag
gacgagtttgatgtaaatgacgatgcgtctgatgcttcatacaattcagaaacagatagc
gagttggaatttagtgaagatgatgcattgtttgatgaggatgatggcaaccttactgat
gttttaagagaagatgcaagtatggcttctctcaaggctgcatttgatgccttagatgaa
aaagttgcctttgataaaatacaggttgatcactctacaaaaggtgaattaccagccaaa
cgtgtcagtgcaagaatgaaagaaaatggtgaacttggtttcttggttggtgcattgcat
gttcttcctctctatgccatgcttccggcagcggctcaactgcgtgtgtttgaagaagtc
aaggaaggagaccggcttgttgttattgctactaatgttgctgaaacttcgttgactatc
ccaggcataaaatatgtggtggacactgggagagaaaaggttaaaacgtataactcctca
aatgggattgaaaattatgaaatacaatggattagtaaggcatcagccgcccaacgtgct
ggaagagctggaaggacagggcctgggcattgttatcgtctctattcttctgcagttttt
agtaatatattccctgatttttctctcgctgaaatagctaaaataccagttgatggtgtt
gtccttcttatgaaatcaatgggtatcagtaaggtggtcaattttccatttcctactcct
cctgagacctcagcggtacttgaggctgagagttgcttgaaggctcttgaagctcttgat
aatgatggcagattgacacccttggggaaggcaatggctcgctatcctttgagtccgcgc
cactccaggatgctacttacggttattcagattatgagaaacttgaaaacttatgatcga
gcaaatcttgttcttgcatattctgtcgcggcagctgcagctttgagcacgtcgaatcct
tttgtcatgatgtttgaaggaagtcaagtgaaggatgatttagaacaatatgatagatct
cttgaacttgctgacacaaaagctgaagaaaaagtggaaaagtcattgaaaaagaagcta
aaagaagctggtaaactctcccgtgaaaagttttcaaatcctactagtgatgctttgacg
atagcttatgctttgcaatgttttgaactttctgaaagtcctgtggcattctgcaacacc
cacacattacatctaaaaactatgcaagaaatgtccaagttgagaaagcagctattacaa
cttgttttcaatcatagtggttctgctattgctgattcagacttttcatggactaatggg
actttggaggatgttgaaaatgtctggaggatcccgtccaataagcatcctctttcactg
aacgaggaagagataattggccaagcaatctgtgcaggttggccagatagggttgccaaa
cgtattagagagatttctaagtcaactgaagatgacagaaaagaacgcactggaaagtat
caagcttgcatggtaaaagaaaatgtgttcctcaaccgacggtcgtctgtttctcgttca
gccccagaatttttggtgtacaatgaattattgtgtacaaaacgaccatacatgcatgga
ttgacaagtgtaaaaccaaattggctcgtgaaatatgctagttccttgtgtactttttca
gcacctttaacagatcctagaccctattacgatcctcaaaatgacacagtgttttcatgg
gttgctcctacatttggccctcatctttggaagcttcctttacacaatgccccaataaaa
gataatgctcatggagttgcagtgtttgcatgtgctttgcttgaagggaatgtgttgcca
tgcctaaagtatgtgcgtaagttcatggcagctcctcccagtagtatcttaaggccggag
gcattaggccaaaaaagagtaggcaatcttctatctagactgaagtccaagaagattaat
agttgtgccacattgagagtggtttggaaggataatccttatgaactccattcagaaatt
ttggattggtttcaagagagttatcacagtcactttgaagacctttggtcacaaatgctg
tgtgaagtacaagagcccccagaacgtctctccaggaagttgaaaagggccaagaaaaaa
ttttga
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