Cucurbita pepo subsp. pepo (vegetable marrow): 111806883
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Entry
111806883 CDS
T05351
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111806883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111806883
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
111806883
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
Motif
Other DBs
NCBI-GeneID:
111806883
NCBI-ProteinID:
XP_023548162
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Position
LG12:4507405..4510972
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AA seq
671 aa
AA seq
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MIMDQDRGHGAKVRVLIEKATNSTDSEVHPRLLKAIKSVVRSSDSELRVAALTLMDLMKR
DHSQVSYLCLLIIDELFMRSKLFRSLVVENLDQLLTLSVGFRRNVPLPAPAAVASILRSK
AIEFLEKWNDSFGIYHRQLRLGYDYLRNILRFKFPNIQANAARRQQERMKRERRSKEILI
SKFEMLKGNFSSIKEEIQSTLDEIKECLDIVHSKEDSKAMIPLDDDITEDFRPSELRQIR
LDALKEGEMVHENNDNKVIFDALREVYKLMSKHLVSIKEWISVLVRVDSTDTRFRDSALR
EFIDIRNSLCAVKKRCEESGCTFTESANHDDKDEDFWEEGPVGATENGDSVAYERKKEDV
AMNGGSFTYERKNEDHVVAPTSNVIKNAGTETISEAHVGKAVQNGEVGSSDSAPSLRNKL
LADAPVIEWGSFLNTWDSKMDILANQRGLELESHWGRVDYDATIPAEKIAELNVRASLYK
EDQPEIQPCHAPLRKGGLCQRRDLRVCPFHGPIVPRDDEGRPFDTSSSLDETTPPNQEMG
SVEKLVKQAVKNVRARDKEAAEKRERDKQALKRAKLAKIREHNEAVLRDAAVASTSRSSG
LGECMETTGEMSGSAGKKKKTLASMLRKKTSTLTKDRISQRLLGIRSRDSTQRQLTLSQG
ANYGDAFPNQW
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggaccaagaccgaggacacggagctaaggttagggttttgatcgagaaggct
accaactccactgattcggaagttcatcctcgcctcctcaaggccatcaaatcggttgtt
cggtcttccgactctgagctccgagtcgccgccctaactcttatggaccttatgaagcgc
gaccattctcaggtttcttatttgtgccttctgataattgatgaacttttcatgagatca
aagctttttagatcccttgttgtcgagaacttggatcaactgttgacattaagtgttgga
ttcagaagaaatgtaccacttcctgcaccagcagctgttgcatctatattacgttcaaag
gcaatcgagtttttggagaagtggaacgattcttttggtatttaccacagacagcttaga
ttaggttatgactacctaaggaacattcttcgattcaagtttccaaatatacaggcaaat
gcagcgcggcgtcagcaagagagaatgaaaagagaaagaaggtcaaaagagatacttatt
agcaagtttgaaatgttgaaagggaatttttcttctatcaaggaagagattcaatcgact
ttagacgagatcaaggagtgtttggatattgttcattctaaagaggattccaaagccatg
attcccttggatgatgacatcacagaagactttcgaccttccgagctgagacagattcgt
cttgatgcactgaaagaaggggaaatggttcatgagaataatgataataaagtgattttt
gatgcattaagggaggtttacaagctcatgtcaaaacatctggtttccatcaaagagtgg
atttctgttcttgttagggttgactcaacggacacaagattcagggattcagccttaagg
gagttcatcgacatacgaaatagtctatgtgcagtgaagaagagatgtgaagaatcgggt
tgtacttttacagagagtgcaaaccatgacgacaaagatgaagatttctgggaagaaggt
ccggtgggcgcaacggagaatggagattctgttgcatatgaaaggaaaaaagaagatgtt
gccatgaatggaggttcctttacgtacgaaaggaaaaatgaagatcatgttgtggcgcca
acatccaacgtgattaaaaatgcaggcactgaaaccattagtgaggcacatgttggcaag
gcggtgcaaaatggcgaagttggtagtagtgattcagccccttccctgaggaataagctc
ttagctgatgctccagttattgaatggggctctttcttaaatacgtgggactcgaagatg
gatattctggctaaccagcgaggattagagcttgaaagtcactggggtcgagtagactac
gatgcaacaattcctgcagagaaaattgcagaactaaatgtccgggcttcactgtacaag
gaagatcaacccgaaattcaaccatgtcatgctcctttaagaaaaggaggactttgtcag
agaagggatctaagagtgtgcccatttcatggacctattgtgccgcgtgatgatgaagga
cgaccattcgacacgagctcttcattggatgaaacaactcctcccaatcaagagatggga
tccgttgaaaagttagtgaaacaggctgtgaaaaacgtacgtgccagagataaagaggca
gcggagaagcgagaacgtgacaaacaagcactgaaacgtgccaaacttgcgaagattaga
gagcacaatgaagctgttttgcgcgacgctgcagtggcatcgacatcaagatcttctggt
ttgggcgagtgtatggaaacaactggtgaaatgagcggatcagctgggaagaagaagaaa
acacttgcgtcgatgctgcgtaagaagacatcgacgttgacaaaagatcgaatatcgcag
aggcttttaggcataaggtccagggattcaactcagaggcagcttacactgagtcaagga
gctaactatggcgatgcattcccaaatcagtggtaa
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