Cucurbita pepo subsp. pepo (vegetable marrow): 111806951
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Entry
111806951 CDS
T05351
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111806951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111806951
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111806951
Complex C
U5 SnRNP specific factors
111806951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
111806951
NCBI-ProteinID:
XP_023548266
LinkDB
All DBs
Position
LG12:complement(6872853..6884622)
Genome browser
AA seq
2347 aa
AA seq
DB search
MWNNGQIAPPGTGGSSIPPPPAAQPSYTVLPSPAEAEAKLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPREHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPW
EQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGLYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSTNKDRREKRTYDDEDDDDFELPEGVEPFLKDTQLYTDTTAAGISLLFAPR
PFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYSTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTEVETRHPIRLYSRYIDKVHILFRFPHEDARELIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKPSNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGMDLAYNLHSAFGNWFPGSKPLLAQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIW
PSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIVMP
PQWGTHQQVNLPTTLPEHDFLNDLEPLGWLHTQPNELPQLSPQDLTNHAKVLENNKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFF
GFYMVPDNGPWNYNFMGVKHTAGMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGETAEG
DREDTFT
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaatggacagattgcaccgccgggtactggtggctcttctattccgccaccg
cctgctgcacagccttcgtacacggtgttgccttctcctgctgaggccgaggccaagctc
gaggagaaagctaggaaatggcagcagctgaattcgaagcggtacagtgataaaaggaag
tttggatttgttgagacccagaaggaggatatgccccgcgaacatgtgaggaagatcatt
agagatcatggggacatgtcctcaaaaaaatatcgtcatgataaacgtgtttatcttggt
gccctaaagtttgttccacatgcagtttacaagctgcttgaaaatatgccaatgccctgg
gaacaggtccgtgatgtaaaggttctatatcatattaccggggcaatcacatttgttaat
gaaataccatgggtggttgaacctatatatttggctcagtggggaagcatgtggattatg
atgagaagagagaagagagatcgtcggcatttcaagaggatgcgtttcccaccatttgat
gatgaggaacctcctctagattatgccgataatttgctggatgttgatcctttggaacca
attcagttagagttggatgaggaggaggattctgctgtttacacctggttctatgaccac
aagcctcttgttaaaacaaagcttatcaatggtccaagttaccggaaatggcatctttcc
cttccaatcatggctactcttcatcggctagctggacagttactctctgatttaattgat
cgcaactatttctacttgtttgatatggagtctttttttacagcgaaagcattaaacatg
tgcataccaggtggaccaaagtttgagccattgtatcgtgacatggagaagggtgatgaa
gactggaatgagtttaatgacatcaacaaactcataatacggtcacctcttagaacggag
tatcggatagcatttcctcacctttataacaacaggccaagaaaagtgaagcttgggtta
tatcacactcctatgattatgtacatcaagactgaagatccggacttaccagcattttac
tatgatcctttaatacatccaataaccagcaccaataaagatcgccgtgaaaagagaact
tatgatgatgaagatgatgatgattttgaattgccagagggggttgaaccttttttgaag
gacactcaactttatacagacaccacagctgctggcatctctcttctgtttgctccacgc
ccttttaacatgagatctggtagaacacgtcgggctgaagatattcccctggtttcagag
tggtacaaggaacactgtcctccatcatatcctgttaaggttagggttagctatcagaag
ttgttgaaatgctttgtgttgaatgagctgcatcatagaccacccaaagctcagaaaaag
aagcatttattccggtcacttcaagcaaccaaatttttccagacaaccgaacttgattgg
gttgaagctggtctgcaagtctgtaagcaggggtacaacatgctgaacttattgattcat
agaaaaaatttgaactatcttcaccttgattataacttcaatctgaagccagtaaagacc
ctaaccaccaaagaacgtaagaagtcacggtttggaaatgcttttcacctctgtcgtgaa
atattgcggttgacaaagcttgttgttgatgctaatgttcagtttcgtctgggtaatgtt
gatgcatttcaattggctgatggcctacagtatatattttcacatgttggacagctcact
ggaatgtacaggtacaagtaccgacttatgcgtcaaattagaatgtgtaaagatttgaag
cacttgatatactatcgcttcaatactggtccagtgggaaaagggccaggatgtggattt
tgggcaccgatgtggagagtctggttatttttcctccgtggtatagttcctcttcttgaa
cgatggctaggaaatttgcttgctcggcaatttgaaggaagacattcaaagggagtagca
aagactgtcactaaacagcgtgttgaaagtcattttgatttggaactgcgagctgctgtc
atgcatgatgttcttgatgctatgcctgagggcatcaagcaaaataaagctcgaactatc
ctccagcacctaagtgaggcatggcgatgttggaaagcaaatattccttggaaggttcct
ggtttgccagttcctattgaaaatatgattcttcgttatgtcaagtcaaaagctgattgg
tggacaaatgttgctcattacaatcgtgaacgtataagaagaggtgctacagttgataag
actgtttgtaggaagaatcttggaagacttacacgtctgtggctcaaggctgagcaggaa
cgacaacataattatttgaaagatggtccatatgtcacacctgaagaagcagttgccatt
tactcaacgactgtgcattggttggagtcaagaaagttctctcctattcctttccctcca
ctgtcttacaagcatgacacaaaattactgatccttgccttagagaggttaaaggaatcc
tacagtgtggctgtgaggttaaaccaactccagcgggaggaattaggtctcattgagcaa
gcttatgataacccacatgaagcgctatctcgtattaagcgtcatctgctaacacaacgt
gccttcaaagaggttggtatagagtttatggatctatacagttatctcataccggtttat
gagattgagcctcttgagaagattacagatgcatatcttgaccagtatctatggtatgaa
ggtgacaagcggcatttgtttcccaattggattaagcctgcagattcagaaccaccacct
cttttggtctataagtggtgtcagggtattaacaatctacaaggtatatgggacacaagt
gacggacaatgcgttgtgatgcttcagacaaagtttgagaagttctttgagaagatagat
ttaacaatgttgaataggcttcttcgtttggttcttgaccataatattgctgattatgtc
actgcaaagaataacgttgtcctgtcttacaaagatatgagccacacaaattcatatgga
ttgatacgtggtcttcagtttgcttcatttgttgttcaatattatggacttgtgcttgat
ctgttgcttcttggtttgacccgagccagtgaaattgctggcccaccacagatgccaaat
gaatttattacttattgggacacagaggtggagacgcggcatccaattcggttatattct
cgttatatagacaaagtacatatcttattccgctttcctcatgaagacgctcgagaactt
attcagagatatctcactgagcaccccgatccaaacaatgagaatatggttggatataac
aacaagaaatgctggccaagagacgcaagaatgaggctcatgaagcatgatgttaatctt
ggaagaagtgttttctgggatatgaagaatcgtcttcctcgcagtatcacaactttggaa
tgggagaacagctttgtctctgtttatagcaaggacaatcctaacctgcttttcagcatg
tgtgggtttgaagtacggatacttcccaagattaggatgactcaagaagcattcagcaac
acgaaagacggagtctggaatttgcagaatgaacagacaaaagaaaggactgctgtagcc
ttcttaagggttgatgacgaacacatgaaggtgttcgaaaatcgtgttaggcagattctt
atgtcttcagggtccacaacatttaccaaaattgttaacaaatggaatactgctctgatt
ggtcttatgacttacttccgtgaggcaactgttcacacacaagaactgcttgatttgctg
gtgaagtgtgaaaataaaattcaaactcgtattaagattgggttgaattcaaagatgccc
agcaggtttcctccagttattttctatactcccaaggaaattggaggccttggtatgtta
tctatgggtcacatattgatcccacaaagtgatcttcggtacagccagcagactgatgtt
ggtgtaacccattttaggagtggaatgagccacgaagaggatcagcttatccctaacctt
taccgatatatacagccttgggaaagtgagttcatagattcacaacgtgtttgggctgaa
tatgctctgaagaggcaagaagctcaggctcaaaataggcgtttgacacttgaagatttg
gaagattcttgggacaggggaataccacgaattaatactttatttcaaaaagatcgccac
actttggcatatgacaaaggttggagggtccgtacagattttaaacaataccaggtctta
aaacaaaatcctttctggtggacgcaccaaagacatgatgggaaattgtggaatctgaac
aactatagaacagatgtcattcaagcacttggaggtgttgaggggattcttgagcacacg
ttattcaaaggaacatacttcccgacttgggagggtctcttctgggagaaggcctctggt
tttgaagaatctatgaagtacaaaaagctgacgaatgcacagagatcaggtcttaaccag
attcctaaccgtagatttactctttggtggtcacctaccataaacagggcaaatgtttat
gtgggatttcaagtgcaattagatctgactggaatcttcatgcatggaaagatcccgact
ttgaaaatctccctcattcagattttccgagctcatttgtggcagaagatccatgagagt
attgttatggatctgtgtcaagttctggatcaggagttggatgctttggaaattgaaact
gtgcagaaagaaacaatccatcctaggaaaagttacaaaatgaacagctcttgtgctgat
attctactctttgctgcccatagatggccaatgtcaaagcctagtcttgtggcagaatcc
aaggatgtttttgatcaaaaaccaagtaataagtactggattgatgtgcagcttcgttgg
ggggattatgattctcacgatattgagcgttacacgcgtgccaaattcatggactacact
acagacaatatgtctatatatccatctcccactggtgtaatgattgggatggatcttgca
tataacctgcattctgcatttggaaactggtttcctggatcaaaaccactattggctcaa
gcaatgaacaagatcatgaagtcaaatccagccttgtatgttctgagggagcgtatacgc
aaaggtctgcagttatattcttctgagcctacagaaccatatttatcatcgcaaaactat
ggagagatcttcagcaatcaaataatatggtttgttgatgatactaatgtgtatcgtgtc
actattcacaagacatttgaaggaaatcttaccaccaaacccatcaatggtgccattttt
attttcaacccaaggaccgggcaactatttttgaaggttatccataccagtgtgtgggct
ggacagaagcgtcttggtcagttggccaaatggaaaacagcggaggaagttgctgctctt
gtacgatctttaccagttgaagaacagcccaaacaaattattgtgactcgtaaaggaatg
cttgatccattggaggttcacttgctcgattttcccaatatagttatcaaaggaagtgag
ctgcaactcccattccaggcgtgcttgaagatagagaaatttggtgatcttattttgaag
gctactgagccccagatggtcctcttcaatatttatgatgattggttgaagagtatctca
tcatatactgcattttcccgtctaattctcatcttgcgtgcccttcatgtcaataatgaa
aaggctaaaatgttgctaaagccagacaaaacaattattacagaaccccaccacatctgg
ccttctctcactgatgaccaatggatgaaggttgaggttgcattaagagatcttatcttg
tcggattatgctaagaagaacaatgtaaacacatcggccctaacacaatctgagattcgt
gatatcatacttggagctgagataactccaccctcccaacaaagacaacagatagctgag
atcgagaaacaggccaaagaagcaagtcaactaacggcagtcacaacaagaacgacaaat
gtgcatggtgatgaactcatcgtcacaacaacgagtccatatgagcaggctgcatttgga
tccaaaactgattggcgtgtgagagcaatatccgccacaaatctctatcttcgtgtgaat
catatttacgttaactcagaagatataaaggaaactggatacacttacatcatgcctaag
aatatcttgaagaaattcatctgcatagcagatctacggactcaaatagctggatatttg
tatggaataagccccccagataatcctcaggttaaagaaatacgctgtattgtaatgcca
ccccagtgggggacacatcagcaagttaatcttcctacaacgcttcctgagcatgacttt
ttgaatgatttggagccattgggatggttgcacacacagccaaatgagcttcctcagttg
tcaccacaggatctcacaaatcatgctaaagtcttggagaacaacaaacaatgggatggc
gaaaaatgtatcattttgacctgtagttttactcccggttcctgctccctaactgcctac
aagctaaccccatcgggatacgagtggggacgtgtaaacaaggacactggaagcaaccca
catgggtacctcccaactcactatgagaaggtgcagatgctcctcagtgatcggttcttt
ggcttctacatggttcctgataatggcccttggaactacaactttatgggggtgaagcat
acagcaggcatgaaatatggagtaaagctcggaacgccacgcgaatactaccacgaagat
caccggcctacccatttcttagagttcagcaacttagaggagggtgaaacagctgaagga
gatcgtgaggatactttcacttga
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integrated database retrieval system
