Cucurbita pepo subsp. pepo (vegetable marrow): 111807085
Help
Entry
111807085 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111807085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111807085
03041 Spliceosome [BR:
cpep03041
]
111807085
03009 Ribosome biogenesis [BR:
cpep03009
]
111807085
03016 Transfer RNA biogenesis [BR:
cpep03016
]
111807085
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111807085
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111807085
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111807085
Complex C
U4/U6.U5 tri-SnRNP related factors
111807085
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
Helicases
111807085
Transfer RNA biogenesis [BR:
cpep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111807085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Prophage_tailD1
Motif
Other DBs
NCBI-GeneID:
111807085
NCBI-ProteinID:
XP_023548429
LinkDB
All DBs
Position
LG12:2958834..2969613
Genome browser
AA seq
994 aa
AA seq
DB search
MGSSKRKVVEDTPRESSPKHHRTNEPAMVEDEPVACVHDVSYPEGSYNPLPSINLSSTGE
KLEPAKVFPFSLDPFQSEAIKCLEIGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITREVAW
IIFDEVHYMRDRERGVVWEESIVMAPKNARLVFLSATVPNAKEFADWVAKVHRQPCHIVY
TDYRPTPLQHYIFPSGGEGLYLVVDEKGHFREDSFQKALNALVPASDGYKKKENNGKWQK
SLTLGKTNEESDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKLDLNGDDEKANIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRCEDGNPENLLRNSFYQFQADRNIPNL
EKQVKSLEEERDSIVIEEEDNLKNYYDLLKQYKSLKKDIRDIVLSPRYCLPFLQPGRLIS
IECDSNNEISSTFSIKDQFTWGLIINFQRMKGVSEDDASMKPESANYTVDILTRCVVSKD
GIGKKNVKIVQLKEHGEPHVVSIPISQISTLASIRILIPNDLLPLEARENTLKKISEVLS
RFPKGVPLLDPEEDMKIQSSSYRKAVRRTEALESLFDKHEVAKSALVDQKLKALHLKQEL
TAKIRSIKKTMRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSANELTL
SELMFNGVFKDIKVEEIIALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKAQLE
CKVEIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLT
LAAKSIGETELETKFEEAVSKIKRDIVFAASLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggctcttcgaagagaaaagtggtcgaagatacgcccagagaatcttcaccgaagcac
cacagaaccaatgaacctgctatggttgaggacgaaccagttgcgtgtgtccatgatgtg
tcctaccccgagggttcttataatcctctcccatcaataaatctctcttccactggagag
aagttggaaccggctaaggtgtttcctttctctctggacccctttcagtccgaggctatc
aagtgcttggagattggagaatctgttatggtgtctgcccatacatcagctggtaaaact
gttgtggcattgtatgcaattgccatgtctctccggaataaacagcgtgtcatatatacc
tcgccaatcaaggccctcagcaaccaaaagtatagggaatttaaagaagaattctcagat
gttggtttaatgactggggatgtgactattgaaccaaatgcttcttgtctggtcatgacc
acagaaatttggcgtagcatgcagtacaaaggatccgaaattacacgggaagtggcatgg
attatctttgatgaagtacattacatgcgtgatcgggagcgaggtgttgtttgggaagag
agcattgtcatggctccaaagaatgctcgacttgttttcctctcagcaactgtgccaaat
gcaaaagaatttgctgattgggttgcaaaggtccaccgacaaccatgtcatattgtttat
actgactatcgaccaacacctcttcaacactatattttcccatctgggggtgagggctta
tacttggtggttgatgaaaagggtcattttcgtgaggatagctttcaaaaagctttaaat
gcacttgtccctgctagtgatggctacaagaaaaaggagaataatgggaagtggcagaag
agtttgactttgggcaaaacaaatgaagagagtgatatatttaagatggtgaagatgata
attcaacgtcaatatgatccagttataattttcagctttagcaaaagagaatgtgaattt
cttgcaatgcagatggcaaaattagatctaaatggtgatgatgaaaaggcgaacatagaa
accatcttttggagtgctatggatatgctttcagatgatgataagaagctccctcaggtt
tcaaatatgttgcccctcttaaagcgtggaataggggtccaccattctggcttgctccct
attttgaaggaggtgattgagatattatttcaagaagggctaatcaagtgtttgtttgcc
acagagacattcagcattggtttaaacatgcctgcaaaaactgttgtcttcagtaatgtt
cgtaagtttgatggggataaatttagatggttatcaagtggtgaatatatacaaatgagt
ggtcgagctggacggagaggaattgatgaacgagggatatgtatccttatggtggacgag
aagctggagccatcaactgctaaaatgatgcttaaaggaaatgcagattgcttgaacagt
gcttttcacttgagctataacatgctcttgaatcaaatccgttgtgaagatggcaatcct
gaaaatctgctgcgtaattccttctatcagttccaagccgaccgcaacatacctaacctc
gagaaacaagtgaaaagccttgaagaggagagggattccatagtgattgaagaggaagat
aatttgaagaattattatgatttgctaaagcagtacaaaagtttgaagaaggatatccgt
gatattgtgttgtctcctagatattgcttaccatttctgcaacctggcagacttatatct
attgaatgcgacagtaataatgagatttcttcaactttttccatcaaggaccagtttact
tggggattaataattaattttcagaggatgaaaggtgtttctgaagatgatgctagtatg
aaaccagaatctgcgaactacactgtggacattcttacaagatgcgttgtcagtaaagat
ggcatagggaaaaaaaatgttaagatcgttcaattgaaagagcacggagaaccgcatgtt
gtttccattccaatctctcagattagtactttagctagtattcgaatactcatacccaat
gatcttttgccgttggaagctcgagaaaatacattgaagaagatttctgaagttttatca
agatttccaaagggagtgccccttctagatccagaagaggatatgaaaattcaaagtagt
tcttacagaaaggctgtgcgtagaacagaggctttggagagcctgtttgacaagcacgag
gtggcaaaatcagcacttgttgatcagaagctcaaagcattacatttgaagcaagagcta
acggctaagatcaggtcaattaagaaaacaatgcgttcttcttctgcattggctttcaaa
gatgaactgaaggccaggaagcgagtattgcggaggcttggttacatcacaagtgatgat
gtcgtggaattgaaaggcaaggttgcttgtgaaatcagtagtgcaaatgaattgactctt
tcagagctgatgttcaatggggttttcaaggacataaaagtggaggaaatcatcgctctg
ctatcttgttttgtgtggcaagagaaacttcaggatgcagcaaagcctagggaagagctt
gagctgcttttcattcaattacaagacacagctcgaagggttgccaaggctcagcttgaa
tgcaaggtcgaaattgatgtggaaggctttgtgagttcgtttagaccggatattatggag
gctgtatatgcttgggcaaaaggatccaaattctacgagataatggaaataacacaggtt
ttcgaggggagtttgattagagcaattagaagactggaagaagttctgcaacaactaact
ctagcagcaaagtccattggtgaaactgaacttgaaaccaagtttgaagaagctgtttcc
aaaatcaagagggatatcgtctttgctgcttctctatacttgtag
DBGET
integrated database retrieval system
