Cucurbita pepo subsp. pepo (vegetable marrow): 111807151
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Entry
111807151 CDS
T05351
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03430
Mismatch repair
cpep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111807151
03460 Fanconi anemia pathway
111807151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111807151
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
111807151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
111807151
NCBI-ProteinID:
XP_023548504
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Position
LG12:complement(8025016..8030861)
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AA seq
921 aa
AA seq
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MDVGIAVDSPTIKPINKGIVHRICSGQVILDLSSAVKELVENSLDAGATSVEISLKDYGE
EWFQVIDNGSGISPTNFRVLALRHHTSKLSDFPDLQSLTTYGFRGEALSSLCSLGNLTVE
TRTKNESVATHLTFDHSGLLVAEKKTARQVGTTVMVKKLFSNLPVRSKEFSRNIRKEYGK
LISLLNAYAVIARGVRFVCTNSAGKNAKSVVFKTQGSGSIKDNIITVFGMTTFNCLESVS
ILLSDECKVEGFVSKSGQGSGRNLGDRQFFFVNNRPVDMPKVSKLVNELYKSANSRQYPI
AIMNFTLPSKACDVNVTPDKRKIFFSDETHILQRLREELLKIYSPINACYSVNKVEEPTK
QVDSVELCSDKRKLSMLVEHFSSDEGKLRDASSHLTLADNDDSLKMIENVEQSSQTIEVV
NSDGEENITRKDFSLRVHGMKKADAFLKDYDQHKKTCFSSKKGEQIFPSSPCVTVTGTDT
SRVQSSLDKFVTKNKRKYETLSAPLSEVPILRNQFLNDQWKKISADNPSKDVKCTHGDCQ
VFDDFSEGNDEDSSIQTNTDRVFNELGIPLSSADHSDDGETTEEECTEEAIAKVPHSVIE
STGTPIKDLEMSEDLPLSDSSVLPSGFMKESSSPQLKLCSTFHFDFHELKKRRMQRQLRY
KLNGYICERKKLKCHYAAATLKLSQPDNEDRKARALEAAAKELDRLFRKEDFSRMKVVGQ
FNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTILNQQPLLRPLRLELSAEEEVVVSI
HMDVIRKNGFVLEEDPHALPGNRFRLKAVPFSKNITFGVEDVKDLISTLADSEGECSIIG
SYRMDTANSVCPSRVRAMLASRACRSSVMIGDPLGRNEMQKIVEHLAELKSPWNCPHGRP
TMRHLVDLTTIKRSDENNADC
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggatgttggaattgctgtcgattccccgaccattaagcccattaacaaaggcattgtc
cacagaatttgctcagggcaagtgattcttgacctctcttccgccgtcaaggagttagtc
gagaacagcttggacgctggagccaccagcgtcgagatttccttgaaagattacggagaa
gagtggttccaggtcattgataatgggtccggcatttctcccaccaatttcagggttctt
gctctcaggcatcatacatcaaaattgtctgattttcctgatctccagtctttaaccacg
tatggtttcagaggagaggcactaagttctctttgttctcttgggaatttgactgttgaa
actaggacaaagaatgagtctgttgcaacgcacttaacttttgatcattcaggactacta
gttgctgaaaagaaaactgcacgccaagttggaaccactgtcatggttaagaagttattc
tcaaatttacctgtgcgcagtaaagagttcagtcgtaacattcggaaggaatatggcaag
ctcatttcattattgaatgcttatgctgtcatagcaagaggagttagatttgtatgcact
aattctgcaggaaaaaatgcaaagtctgtagtattcaaaactcaaggaagtggttccatt
aaggataacatcataacagtgtttggtatgactaccttcaactgcttggagtctgtatct
atattattatcagatgaatgcaaagttgaaggatttgtgtcgaagagcggacagggaagt
gggaggaatttgggagatcggcaattcttttttgtaaataatcgacctgtggatatgcct
aaagtgagcaagcttgtaaatgagctatataaaagtgcaaactcccggcaatatccaatt
gcaatcatgaatttcactctcccaagtaaagcttgtgatgtcaatgtaactcctgataag
agaaaaatattcttctctgatgaaactcacattttgcaaagattgagggaggaactactg
aagatctattctccaattaatgcctgctattctgtgaataaagttgaagaacctactaaa
caagtagatagcgttgagctgtgttctgataaaaggaaattgagcatgttagtggaacat
ttctcatctgatgaaggtaagctcagagatgcttcttctcatctgactttggctgataat
gatgattctctcaagatgattgaaaatgtggaacaatcctcacaaactattgaggtagta
aatagtgatggtgaggaaaatataaccagaaaggacttctctcttagagtgcatggcatg
aagaaggctgatgcttttttaaaggattatgatcagcataagaaaacttgtttcagtagc
aagaaaggtgaacaaatttttccttcctctccatgtgtgactgttactggaaccgataca
agccgtgttcaatcatcacttgacaagtttgtaactaaaaataagagaaaatatgaaact
ttatctgcaccactgtctgaagtgcccatcttaagaaaccagtttcttaatgatcaatgg
aagaaaatcagtgccgataatccttccaaggatgtgaaatgcacacacggagactgccag
gtgtttgatgatttttcagaagggaatgatgaagacagctccatacaaactaatacagac
agagttttcaatgaacttggtattccactatcttctgcggaccatagtgatgatggagaa
acaacagaggaggaatgtacagaggaagccatagctaaggtgcctcattctgttatagaa
tcaactggtacacccatcaaggatcttgagatgtctgaggatcttccactatccgactct
tcagtacttccttctggttttatgaaagaaagctccagtcctcaattgaagttatgttca
acgtttcattttgattttcatgagctgaagaaaaggaggatgcagaggcagttgagatac
aaactgaatggctatatatgcgaaaggaagaagttgaaatgccactatgctgctgctact
ctgaagctttctcaacctgataatgaagaccggaaagcaagggctttagaagcagctgcc
aaggagctggaccggctcttcagaaaggaagattttagtagaatgaaggttgttggacaa
ttcaacctgggatttatcattgggaagttagatcaagatttgtttattgttgatcagcat
gctgctgatgagaaatacaactttgagcgactgtcacaatcgacaattttaaaccaacag
cctttactaaggccgttgaggttggaattgtctgctgaagaagaagttgtcgtttcaatt
cacatggacgtaatcaggaagaatggatttgttctagaggaagatccacatgctctacct
ggaaatcgattcagattaaaagctgtccctttcagtaaaaatataacattcggagttgaa
gatgttaaggacctgatttctacacttgctgatagtgaaggtgaatgttctataatcggc
tcgtatcggatggacacagccaattcagtctgcccttcccgagttcgagcaatgctggca
tcacgggcatgtagatcctctgttatgattggggatccactagggagaaatgaaatgcag
aagatagtggagcatttggcagagttgaaatctccttggaactgccctcatggaaggcca
accatgagacacttggtggatcttacaacaattaaaaggtcagatgaaaataacgccgac
tgttga
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