Cucurbita pepo subsp. pepo (vegetable marrow): 111807395
Help
Entry
111807395 CDS
T05351
Name
(RefSeq) transcription initiation factor TFIID subunit 12b-like
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111807395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111807395
03036 Chromosome and associated proteins [BR:
cpep03036
]
111807395
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111807395
Coactivators
SAGA/TFTC/STAGA complex
111807395
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111807395
STAGA complex
111807395
TFTC complex
111807395
SAGA complex
111807395
SLIK complex
111807395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
111807395
NCBI-ProteinID:
XP_023548874
LinkDB
All DBs
Position
LG12:complement(5916259..5922219)
Genome browser
AA seq
668 aa
AA seq
DB search
MADSTSSPRTVQTNPMDPSPPPPQHQTQVQPSTTAVPQNSSNPSNSSGNPPIPSPSALVQ
SPSIDHLHPLSQISSPPPLSHISLPQNQQQQQQLSPAVGLDYQQKPLQQQQQQQQQQQQH
SQQLVQQPQNASAMTNFQIQQALQRSPSMSRLNQMQPQQQQQQQQQFGMMRQQSALYSQM
NFGASSTNQQQQQPNQQQQIGTGNLSRSALIGQGSHLPMLSGAAAAAQYNLQSQLLASSK
QKAGLVQGAQFQSGNSHGQALQGIQAMGMMGSMNLTSQLRANGLASSYAQQRINQGQIRQ
QLSQQSSLTSPQVQNLPRMSNLAFMNQQLTNLAQNGQSNMIQNSLQQQQWLKQIPSMSTP
GSPSYRLQQRQQVLLQQQLASSNQLHQNPMSLNSQQFPQLVQQQPSMGHQQQQQQPQAQQ
QQPQQQQLQQQQLQQQTLHQQQQLLQQPSPQNSLQPVLHQHQHQQHSPRIAGLVGQKSLS
LTGSHPDATASGTSTPGGSSSQGTEAATQVLGKRKIQDLVSQVDPHGKLEPEVEDLLLEI
ADDFIDSVTTFSCNLAKHRKSSTLESKDLLLHLEKNWQLNIPGYSSDERKNQNKSLSSSD
VHKKRLDMIRILKEASRVETNMNTPKEMVRQGVGMSIGTNTLTRPSPSSEQLLSQTAGSQ
LLQQMTRF
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagtacttcgtctcctagaacagttcaaacgaacccgatggacccttcgcca
ccgccgccgcagcatcaaacgcaagttcaaccttcaaccaccgctgttccacaaaattca
tcgaatccgtcaaattcctctggaaatcctcccattccatcgccttctgcgcttgttcaa
tcaccttcgattgaccacttacatccgctgtctcaaatctcttctcctcctcctctttcg
cacatctctctcccgcaaaatcaacagcaacagcaacagcttagccctgcggttggattg
gactaccagcagaagcctctacagcagcagcagcagcagcaacaacaacaacagcaacat
tcgcagcaattggtgcaacaacctcagaatgcgagtgcgatgacgaatttccaaatccag
caggctttacagcggtcaccttcaatgtctcggttgaaccaaatgcaaccgcagcagcag
caacagcaacagcagcagtttgggatgatgagacagcaatcggcgctttacagtcagatg
aattttggtgcgtcttctacaaaccagcagcagcaacagcctaaccaacaacagcaaata
ggaactgggaatctgtcgcggtctgcattaattggtcagggtagccatttgcccatgttg
tctggggcggctgctgctgctcagtataacttgcagtcacaattacttgcttcgtcgaag
cagaaagctggtttagtccagggggcgcaatttcagtcgggtaactctcatgggcaagct
ttacaaggaatccaagcaatggggatgatgggttcaatgaatttgacctcgcagttaaga
gccaatggccttgcgtcgtcatatgcccaacagagaataaaccaaggccaaataaggcag
caattatcacaacaaagctcactcacgtctccacaggttcagaacttaccgagaatgtca
aatctagcatttatgaatcaacagttgactaatttggctcagaatgggcagtcaaacatg
atccagaactctttgcaacagcaacagtggttgaagcaaattccatcaatgtctacccct
ggctcaccctcatatcgtcttcaacagaggcaacaagtcctgctacagcagcaattggct
tcatctaatcaattgcatcaaaaccccatgtccttgaactctcaacaatttcctcagctt
gtacagcaacagccgtccatgggacatcaacagcaacagcagcaaccacaggcacaacaa
cagcaaccacaacaacagcagctacaacaacagcagctacaacagcagacccttcatcaa
caacagcagctacttcaacaaccatcccctcagaattctctgcaaccagtattgcatcag
catcaacatcagcagcattctcctaggatagctggacttgtgggccagaaatctctcagt
ttgactggatcacatccagatgctacagcgtctggcactagtacacctgggggaagttca
agccaagggacagaagctgccactcaagtccttggaaagagaaagatacaagatctggtt
tcacaggtagatccgcatggaaagctggaacctgaagttgaagatcttctcttggagatt
gccgatgattttattgactcggttactaccttttcatgcaatttggctaaacaccgaaag
tcctcaactttagaatccaaagatctcttgctacacttagagaagaattggcagttgaac
attcctggatattcaagtgacgagcggaagaaccagaacaaaagtttatcatcaagtgac
gtccacaagaaacgtctggacatgatacgcatattgaaggaagcttcccgtgtcgaaaca
aacatgaacacccctaaagagatggtccgacaaggggttggaatgtccatcggtaccaac
actctaacaaggccttcaccaagttcagaacaactattgtcacagacagccggttcacag
ctgctgcagcaaatgacgaggttttaa
DBGET
integrated database retrieval system
