Cucurbita pepo subsp. pepo (vegetable marrow): 111808014
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Entry
111808014 CDS
T05351
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111808014
09122 Translation
03013 Nucleocytoplasmic transport
111808014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111808014
03041 Spliceosome [BR:
cpep03041
]
111808014
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111808014
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111808014
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111808014
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
LIM_bind
Motif
Other DBs
NCBI-GeneID:
111808014
NCBI-ProteinID:
XP_023549535
LinkDB
All DBs
Position
LG13
Genome browser
AA seq
1887 aa
AA seq
DB search
MALPPVECIYVVESNLREWKSGNSSFRVPQPVPVLRFLYELCWTMVRGELPFPKCKAALD
SVEFSDQMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDAS
NNNFSGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKYHASQILG
FKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIVLDSIYAHLLPKEDEAFEHYDSFSSKRL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFSALDMESEAVNERSPELENNQTLGLLTG
FLSVGDWYHAHILFDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGASSG
TSIDIIGTTSLPVGGTFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGCYMSAIEFV
NSMESGLNPEFGILAGNRAPHLHLKEARLKIEEALGTCLLPSLQLIPANPAVGQGIWEVM
NLLPYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH
ANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGL
NLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYT
ENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLI
AQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPTSAYAQLIPSLNELAHL
YHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDLEPAVCSADVVLDLGS
SQKLVRWSDLLDTVKSMLPPKAWNSLSPDLFTTFWGLTLYDLYVPRSRYETEIAKQHSAL
KALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVRRRLSREKDKWLSSC
PDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIK
SDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQNNS
IYPSQNEPGGGKTAALAIPNSDSLNIGKDHSLRSRSSDVRMDKIDGSSVPKSEIEHGKMK
GTSLNGPDSQPLVPSTSVHSGSLSLKPGDDLSRTLDEGSSKAISKTTSESELRVSAKRSA
PAGSLNKAPKQDVTKDEIRTGKAASKNPGSSTSERELPSHSTDGGRHGGSSNVPSSVMPN
GNTQGSLTKGSSLSVKALDGHTIESKAESGVGRTSDSRASSAKDDGTEALEVARSSSSRL
AHSPRHDNSTSGSRSSDKLQKRASPAEEPDRQGKRRKGDGETRDVDGDFCISDKDRSMDP
RSVDADKLGTDEQGGYRGSDKPLDRTKDKVNERYDREYRDRVERPEKSRGDDPSVERTRD
RSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYTDSSIEKSHVDDRFHGQSLP
PPPPLPLHMVPQSVNSGRREEDADRRFGTTRHTRRLSPRHEEKERRRSEENLISQDDAKR
RREEEFRERKREERELGMSLKADDRDREREREKANLLKEDMDGSATSKRRKLKREHLSLA
EAGEYSPVGPPPPPIGVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVNKMTR
READLMYDREWDDEKRMRADQKRRHRK
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggctctccctccggttgagtgtatatatgttgtagaaagcaatcttcgagaatggaag
tccggaaattcgagctttagggttcctcaacctgtccctgtgcttcgattcctttacgag
ctctgctggaccatggtccgaggtgaattgccattccccaagtgtaaagcagcattggat
tcagttgagttctcggatcaaatgtctgcggaggagttaggatcaacttttgctgatgtc
attacccaattggcccaagatatcacattagcaggagagtatcgtgctcgtctcttgaaa
ttggctaagtggcttgttgaatcagcatttgtcccattgcggctttttcaggagcgctgt
gaggaagaatttctatgggaggctgaaatgataaagattaaggcgcaagaattgaaaaat
aaagaggtccgagtaaatactcgtcttctatatcagcaaacgaagtttaatcttctgcgg
gaagaaagtgagggttatgccaagttggtaacacttctttgccgggtcactgacgcttca
aataataatttttcgggatcaacaattggtattataaagtcattgattgggcattttgat
ctggacccaaaccgtgtttttgacattgtcttggagtgttttgaacttcagccagaaaat
agtgttttcgtagagctaattccaatatttcccaagtatcatgcttcacaaatccttggg
ttcaaatttcaatattatcagcgtattgaagtaaattcgccagtgccatttgggctttat
aagcttacagcgttactagtgaaggaaaaatttattgttcttgatagcatatatgcacat
ctgctcccgaaagaggatgaggcatttgaacattatgattccttttcttccaaaagactt
gatgaggctaacagaataggaaaaataaatcttgcggcaactggaaaggacctaatggat
gacgagaagcaaggagatgtaagcatcgatcttttttctgcccttgatatggaaagtgag
gcagtcaatgaaaggtctccagagctggaaaacaatcaaacattgggcttgcttactgga
tttctttctgtgggtgactggtatcatgcacacatactgtttgatcggctttcacctctc
aatcctgtggagcatcttccaatttgtaacagcttgtttaggctcattgaagaatcaatc
tcctctgcatattctattgtccgtcaaaatccttatcagagcttgggggcatcctctgga
actagtattgatattataggcactacaagtttgccggtgggtggtacttttatagatctt
ccaagggaactattccagatgcttgccgctgctggaccttatctctatcgtgatacaatt
ctgctacagaaggtttgtagagtgcttagaggttgttatatgtcggcaattgagtttgtc
aacagtatggaaagtggtctgaatcctgaatttggtatcctagctggaaaccgggctcct
caccttcacttaaaggaagcaaggttgaagattgaggaagccctaggaacgtgcctactt
ccttctttacagttgatacctgccaatccagctgttggtcaaggaatatgggaagtaatg
aatcttcttccatatgaggtgcgatatcgtttatatggtgaatgggagaaagatgatgag
aagattccaatggttttggctgcaaggcagacggcaaagttggacacacgaaggattttg
aagcggttggctaaagaaaatttgaagcaattgggtaggatggttgcaaaacttgctcat
gcgaatccaatgactgtccttcgtacaatagtacaccagattgaggcatatagggatatg
attactcctgtagtagatgcattcaagtatctgactcagcttgagtatgacatattggaa
tatgttgtgattgaacgcttggcacaaggagggcgtgacaagttgaaggatgatggcctt
aatctctcagattggctccaatcattagcttcattttggggtcacctgtgtaagaagtac
ccatctatggaactaaggggtttgtttcagtatcttgtcaatcagttaaaaaaaggccaa
ggaattgagcttgttctcctgcaggagcttgttcaacaaatggctaatgtccaatacaca
gaaaacctgactgaggaacagttggatgctatggcaggaagtgagacacttcgttttcag
gcaacttcttttggagttacacgaaataacaaggcattgatcaagtcgagcaacagactg
cgtgactcgttgcttcccaaggatgaaccaaaattggcagtcccccttttgctacttatt
gctcaacaccgttcagtggttgttataaatgcagatgctccttatataaagatggtcagc
gagcagtttgatagatgtcatggaactctgcttcaatatgtggaatttcttagtagtgca
gttacgccaacatctgcttatgctcagttgattccctcactcaatgaacttgcccatctt
tatcacctagatcccgaggttgctttcctgatatatcggccaataatgagactattcaag
tgtcaaggtggatctgatatcttctggccactggatggtaatgatgcaaatgttgctggc
aataattctgatctggaacctgcagtatgttctgctgatgttgttttggatcttggttct
tcacagaaacttgtgaggtggtcagatctgctcgatactgtaaagtctatgttgcctcca
aaagcttggaatagcttgtctccagatctctttactacattttggggtctcaccctctat
gatctttatgttcctcggagtagatatgaaactgaaattgctaagcagcattctgctctt
aaagctttagaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagac
aaagaaagaattcaagaatctcttgatcgcctgtccaatgaacttgttaagcatgaagaa
aatgttgcatcagttcgtagacgactttctcgtgaaaaggataaatggttgagctcctgt
cctgatactttgaaaattaacatggagttccttcagcgttgtattttcccccgctgtaca
ttcagcatgcctgacgctgtctactgtgctatgtttgtgcacactcttcattcccttgga
acaccatttttcaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaaccc
atgatatgctgctgtacggaatatgaagcaggcaggcttgggaggtttttatatgagaca
ctaaagatagcttatcattggaagagtgatgaatccatttatgaacgtgaatgtggaaat
atgcctggatttgctgtctattataggtatccaaacagccaaagagtaacgtacggccag
ttcatcaaggttcattggaagtggagccaaagaattacacggttattgatacaatgcttg
gaatctacagagtacatggaaattagaaatgctcttataatgttgacaaaaatatccaat
gtgtttcccgtcactagaaagagtgggatcaaccttgagaaacgggttgctaagatcaaa
agtgatgaaagagaagatctgaaggtgttagcgactggcgttgctgcagccttggctgct
agaaagccttcatgggttacggatgaagagtttggcatgggttaccttgaattaaagact
gcaccatcacttgcatcaaagtcttcggccagtaatttagctgctagccaaaataattcc
atttatccttcccaaaatgaacctggtggagggaagactgctgcattagccatcccaaat
tcagattctttaaatataggcaaagaccattcattgaggtcaagaagttctgatgtgaga
atggataaaatagatggttcttctgttccaaaatctgagatcgagcatgggaaaatgaaa
ggcacatcattgaacgggccagattcccagccactggtgccctcaacgtctgtacattca
ggatcgttaagtctgaaacctggtgatgatttaagtaggactttggatgagggctcatca
aaagctatttcaaagaccacgtctgaatccgagttgagagtttcagcgaaacgatcagca
cctgctgggtctcttaataaagcaccaaaacaagatgtcacaaaagatgagattagaaca
ggaaaagctgctagcaagaaccctgggtcttccacaagtgaaagggagcttccaagtcat
tcaacagacggtggtaggcatggaggttcttccaatgtaccttcttcagttatgccaaac
ggtaatacacaaggttcgttaactaaaggctcgtccttatcagtaaaagctttagatggt
catactattgaatcaaaggcagagagtggggttgggaggacttccgatagtagggcttca
tcagcaaaggatgatggcactgaagctcttgaagttgcaaggtcctcttcttccagactt
gctcattctcccaggcatgataattcgaccagtggttctagatctagtgataagctgcag
aaaagagctagtcctgcagaagaacccgacagacaaggtaaacgccggaaaggagatggt
gaaactagagatgtagatggggatttttgtatctctgacaaggatagatctatggatcca
cgttctgtagatgctgataaactaggaacggatgaacaaggtggttacagaggttcagac
aagcctttggatcggacaaaagataaagtaaatgaaaggtatgatagggaatacagagac
cgggtagagcgccctgaaaagtcccgtggagatgatccatcagtagaaagaacaagagat
agatcaatagaaagatatggaagagaacgctcggttgaaaaagtggagagagtttctgat
aggtatcctgaaaagtctaaggatgaaagaaataaagatgataggagcaaattacgatat
actgactcaagtatagagaagtctcatgttgatgatcggttccacggacagagcttgcca
cctccgccgcccttgcctctacacatggtccctcaatctgttaatagtgggagaagagaa
gaagatgccgataggaggtttggaactactagacacactcgaaggctttctcctagacac
gaagagaaggaacgaagacgatcagaggaaaatttaatttcacaggatgatgcaaaacgc
agaagagaagaggaatttcgagaaagaaagagagaagagagagagttggggatgtcattg
aaggctgatgacagggatagggagagggagagggaaaaggcaaaccttttgaaggaggac
atggacggttctgccacctccaagaggcgaaaacttaaaagggagcatctgtcattagct
gaggccggtgagtattctcctgttggcccaccacctcctccgataggtgttggtgcgtct
caatcttatgatggacgagaaagaggagaccggaagggagtaatgatgcagcgtgccggt
tacctggatgacccaggcttgagaattcacggtaaagaagtggtcaacaagatgactaga
cgtgaagctgatctaatgtacgaccgagaatgggacgatgagaaaagaatgagagcagat
cagaagcggaggcatcggaaataa
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integrated database retrieval system
