Cucurbita pepo subsp. pepo (vegetable marrow): 111808111
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Entry
111808111 CDS
T05351
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111808111
09123 Folding, sorting and degradation
03018 RNA degradation
111808111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111808111
03041 Spliceosome [BR:
cpep03041
]
111808111
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111808111
mRNA cycle factors
Stress granule specific factors
111808111
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Complex C specific factors
111808111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_RdRP1_2
RRM_5
RRM_7
RRM_3
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
111808111
NCBI-ProteinID:
XP_023549690
LinkDB
All DBs
Position
LG13:complement(6559541..6563365)
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AA seq
657 aa
AA seq
DB search
MAAMIPAPVISAPIQTAVIPPPVGSVPTGEVFLSSSLYVGDLELNVNEAQLLELFSRVAQ
VVSLRVCRDQTRRVSLGYGYVNFSNHQDAMTAMEHLNFTSINGKPIRIMISNRDPSIRKS
GYANVFIKNLDASIDNKALHDTFASFGTVLSCKVALDSNGQSKGYGFVQFDTKEAAESAI
IKLNGMLLNDKQVYVGHFIRRQERMRANGLQFTNVYVKNLPENMMDDGLKSLFGVHGTIT
SAVVKTDSNGKSKGFGFVNFESTDSAAAAVEKLNGTLIGEDKILYVGKAQRKAEREAELK
EKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTG
FVAFSSPDDAARAINEMNRKMKGRKPLYVAVAQRKEERKAQLQTQFAQIRVASEISSLTS
GMPGFHPGAHRLAPQQLYYGQGNPGLVPPPPGYSFQPQLMNGMRPSMGPNFIMPYQFQRQ
VQPGPRSGIRRGGNSQPVHQQQQQQQQQLMLRGAGQGYRYMNNARNGLEPPVLPHGLVGP
MMPLAFDSSGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLMLGEQLYPLVERLEPTH
AAKVTGMLLEMDQPEVLHLIEPPDDLKNKVAEAMEVLRKASSEPDLSDQLGSLVLTK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcggctatgattccggcaccagtgatttctgctccgattcaaacggcggtcattcct
cctccggtgggatctgtgcccactggagaagtttttttgagttcttcattgtatgtgggc
gatctggagcttaacgtgaacgaggcacagcttttggaactgtttagccgtgtggctcag
gttgtctcccttagggtttgcagggatcagacacgcagagtatcgcttggatatggttat
gttaattttagcaatcatcaagatgctatgactgccatggaacacttgaatttcacctct
attaacgggaagcctatcaggattatgatctcaaatcgagatcctagcattcggaaaagt
ggctatgcaaatgtttttatcaaaaatctggacgcatcaattgataacaaagcattgcat
gatacatttgcttctttcggtactgttctttcttgtaaagttgcgcttgatagcaatggt
caatcaaaaggttatggattcgtgcaatttgataccaaggaagcagccgaaagtgccata
ataaagttgaatggcatgctcctcaatgacaagcaagtatatgttggccatttcattcga
cgccaggaaaggatgcgagcaaatggattacaatttactaatgtttacgtaaaaaattta
ccagaaaatatgatggacgatggcctaaaaagtctgtttggtgtacatggtaccattact
agtgcagttgttaagaccgattcaaatggaaagtccaaaggttttggttttgtgaacttt
gagagcacagactctgctgctgctgcagttgaaaagctgaatggtaccctcattggtgag
gacaagattttgtacgtaggcaaggctcaaaggaaagcagaaagggaggctgaattgaaa
gaaaaattcgaacgggatagaaagatcagatttgataaattacaaggcgcaaatttgtac
atcaaaaatcttgatgaccatattgatgatgagaagcttaaagaattattctccgagtat
ggaacaatcacatcatgcaaggttatgcttgacgaaaatggagtgagcaaggggactggt
tttgttgccttttcttcaccagatgatgcagctagagccataaatgaaatgaatagaaag
atgaaaggaaggaagcctctgtatgtggctgttgcccagcgcaaggaagaaagaaaggcc
cagctacagacacagtttgcacagatccgagtagctagtgaaatatcatcactgacctca
ggaatgccaggatttcatccaggggcacaccgacttgctcctcagcagctgtattatggt
cagggaaaccccgggctggtgcccccaccgcctggatacagcttccagcctcaacttatg
aacggaatgcgacctagtatggggcccaacttcatcatgccctaccagtttcagagacaa
gtacagcccgggccacgctcggggatcaggcgtggtggaaattcacaacctgtacatcag
cagcagcagcagcagcagcagcagttaatgctccgtggcgctggacaaggttatagatac
atgaacaatgcacgaaatggattagagccgccggtcctgccccatggtcttgttggtcca
atgatgcctctagcttttgatagttctgggatgtctagcccaccaatcgacatccagcga
tcaagggctgtgcctacttcaacactcgcatctgcattagcttctgctacacctacacat
cagcgtttgatgctcggcgagcagctgtatccactcgtagaacgtctcgagccaactcat
gcggcaaaggttactggaatgttgctcgagatggaccagccagaggtgcttcatctcatt
gaaccacctgatgacttgaagaataaggtggctgaggcaatggaagtcctccgcaaagct
tcgtcggaacccgacctctctgatcagcttggttcgttggtgctgaccaaatga
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