Cucurbita pepo subsp. pepo (vegetable marrow): 111808228
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Entry
111808228 CDS
T05351
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111808228
03036 Chromosome and associated proteins [BR:
cpep03036
]
111808228
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
111808228
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111808228
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
111808228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
111808228
NCBI-ProteinID:
XP_023549845
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Position
LG13:5255410..5259062
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AA seq
728 aa
AA seq
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MQKVDMSVFLHILRCFCCCCDDPDLDNNYREIYTANSSERFRVSNVRDSSSYQKIQPDTS
AVTPLLYYDHYPNYSKAKESTLEKSSTASYNAKTSNLLQHSSKPQSSPVFPKPSSHTAAP
NCGKSNSSSFRAHSLSSSTLEKTSTASYNAKTSSPLQHYSKPQSSHPTPSGSISPSSSSS
SSFGAHSRSSSLLRPQEISYLRSPSPVSSDLTRSSVNQLVSSSKLPTPTPKPSYSLPSPS
TTSFPEPPREPTLHPTSSSKTNAQEYILDSDSLSTLYLAPKDIEDLIKNDIVPHVLRKPL
SPSTYKSYFAALLYAEDFYYKKWSDYKLRNVSLELQQITIHKRPNKKTKFNGHEKVTTTF
VAFEIDSVPERRPFLLSRDLVHARLCERKLEPFQGLVYKVSRSNYQLRMNNILLVNFGED
FHSRHRKTDKYDISFTFNRVCLKRAHQAIKEASDSLLQSFLFPKSTSRKVDPYIEVTRSG
QQLLDPAQKNAIRQILLLQGSPPYLIRGSPCVSSYDWAENQTRKITKTGEVVVGAVFQIY
STSPNCKILICAPRNTTCDELMISLKKVIPESNMFRAIAAFRERDEVPDDILPLCDYNRD
QECFACPALDELHKYKIIFSTFMSSFRLRTKGSAPGHFSHIFLLDASAAIEPEVLVPLTK
FAIDATNVIVTGQRGNHPYWVRSQIARRHGLKISYFERLEERMPYRGNNPSFISEVYEED
DESEDSFI
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggtcgatatgtcagtgtttcttcacatcttgcgttgcttttgctgttgttgt
gatgatcctgatcttgacaacaattaccgtgaaatttatactgctaatagttctgaaaga
ttcagagtttccaacgttcgtgattcaagtagttatcaaaaaatccaaccagatacttct
gctgtaactcctcttctttattatgatcattatccaaattattccaaggcaaaagagtcg
acattggagaagagtagtacagcatcttataatgccaagacttcaaatctactgcagcat
tctagtaaacctcagtcttcacctgtattcccaaaaccatcttcccatactgctgctccc
aactgtgggaaatccaattcatcttccttcagagctcattcgctttcatcatcgacattg
gagaagactagtacagcatcttataatgccaagacttcaagtccattgcagcattatagt
aaacctcagtcttcacatccaactccatcaggctctattagtccttcttcgtcgtcttcg
tcttccttcggagcccattcgcgttcatcgtcacttcttagacctcaagagatatcgtat
ctacgatctccttctccagtttcctctgacttaacccgatcttcagttaaccaacttgtt
tcttcatctaaactgccaacaccaactccaaagccctcttattctcttccctccccatct
actacatctttccccgaacctcctcgagagccgactctacatccaacttcatccagtaaa
acaaatgcacaggagtacatattggattctgatagtttgtcgactttgtacttagctcct
aaggatattgaagatctgataaaaaacgacattgtacctcatgttctgagaaaacctctg
tcgccttcaacatataagtcttactttgctgccctgctctatgctgaggacttctattat
aagaaatggagtgattacaaattgagaaatgtcagtttggagctccaacaaataacaatc
cataaaagaccgaacaagaaaacaaagttcaatggccatgagaaggtcactacaaccttt
gtggcatttgagatcgactctgtccctgagaggcggccatttctcttgtcaagggatttg
gttcatgcaaggctttgtgagaggaaacttgagccatttcagggccttgtctacaaagtt
tccaggagtaattatcaattaaggatgaacaacattctgttggtcaattttggggaagac
ttccattctcggcatcgcaaaaccgacaaatacgacatcagttttaccttcaacagagtt
tgtttaaagagagctcaccaagctataaaagaagcgtctgattctttgctccagagtttc
ctcttccctaaatccacgtccagaaaagtcgacccctacatcgaagttacacgttcaggc
cagcaattacttgaccctgctcaaaagaatgcaattcgtcagattttactcttacaaggt
tcaccaccttacctaatcagaggttcaccctgtgttagctcttatgactgggcagagaat
caaactaggaaaatcacgaaaacaggagaagttgttgtaggagcagtgtttcagatttac
tcaacctctcctaattgtaaaattctgatatgtgctcccaggaatacaacatgtgatgag
ttgatgatatctttgaagaaggtgattcctgagtcgaacatgttccgtgctatcgcggct
tttcgagaacgagacgaggtcccagatgacatcttaccactgtgtgactacaacagggat
caggagtgtttcgcttgtcctgcacttgacgagctccacaaatacaagataatattctcg
acgttcatgagcagctttcgactacgtactaaaggctcggctcctggacattttagccat
atttttctgttggatgcatcggcagctatcgagcctgaggtgctagttcccttgactaag
tttgcaatagatgctactaatgtcatagttacgggacaaagagggaatcatccatattgg
gtacggtcacaaattgctcgaagacatggattgaagatatcatattttgagagacttgag
gagaggatgccatatagaggcaataatccatccttcatttcagaggtatatgaggaagat
gatgaaagtgaggatagctttatatga
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