Cucurbita pepo subsp. pepo (vegetable marrow): 111808406
Help
Entry
111808406 CDS
T05351
Name
(RefSeq) nuclear pore complex protein NUP160
KO
K14303
nuclear pore complex protein Nup160
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111808406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111808406
03036 Chromosome and associated proteins [BR:
cpep03036
]
111808406
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111808406
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111808406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP160_helical_2
Beta-prop_Nup120_160
TPR_NUP160_120_M
HEAT_Nup120
TPR_Nup160_C
NUP160_helical
Nucleoporin_N
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
111808406
NCBI-ProteinID:
XP_023550112
LinkDB
All DBs
Position
LG13:complement(144673..176359)
Genome browser
AA seq
1518 aa
AA seq
DB search
MKPTRTENMGRRVPLAGMETSIMATDAVEFIDVSVPSSSLRDGAITSVAPPACTSFTEDH
ASCAVVGDPPTYLIWRIRKIRPHVVELLQFSTANEFRRIGLRIAFPETLHPAVFVCTNEI
SSSTGHPFLMYAVTSSGIAYCLKLRNVSSYISCSVIPLDEVVEFNLHTHPDSKPVTSVSA
ISGCLVIGRHDGSVSCFKLGSLDQHSPGFQHELRDDSGFNRLLGFISRVKLAGAVHDMVI
SEVCGRQFLFVLHSDGVLRVWDLSCHSRVLNHSMNIATMAEAKFVRLWVGQGSIDTSTMP
LAILYKHPDHSLEMINIYRLHFSWGDRVSLLLEPSTHNIPFNQGGCLDVKLASDKIWILK
DNTLIFLDLFPSDGHVGEAQCYALQEEFIADQLFQSADYSSDAILWVTHSIFSSTKDEVV
PFISSIFVRRLLQPGVYNEMALRATLLEYSRHWTDSNFQSMTSDELKQEILSLIEDEGAT
ATPVSIYLWWKNFCTHYIHHWCTNNAPSFLLIDNTSTAVGLVRRNSVSLFRCLDNVEQLL
DGFSGELDELGGPDVDWIDNDSDSELLLEVLRCVISISNRLGKTTLAIFYESLMSTPIIP
FGEIVGRILKILENGYGSSVGTIKRSDLHAGYGWERELTDKKNLRKFSIEMMLSLHTLCN
KGASWGRVLDVVESFLKYFVPRKMSHKVQPQRSSDVNTSILVHATSQISKVMLESALDVL
LFLNYMVSVSGQVGLLHDDTSRIKLDLIPMIEEIICEWHIIHFLAITPSESAAVEDFSSQ
LSLLQIDKNGSKEIWKGKLGKCDFTLASLLMLKMNPSTEGPIYLSSKCLLSPQDIVLATH
NFTSWVIWGNGREPSAFLNTSTELALVLLRHGQYDAVEYLLSVVKAQSQNEKTSQCMQDV
DGGWCIMHHLLGCCQLAQAHYKLHGMMKERKVHEAICSFFRASSGNRSSQALQSLPPEVG
LSSFELTGCLSSITWRFHYYQWAMQLFEQYNISKGAFEFALAALELVEEAVSPNDNCGRL
PSNESAISIQGRLWANIFKFSLDLHQFYDAYCAIISNPDEESQYICLRRFIIVLYECDAI
KILCCGELPFIGLAEKVEQELVWKAERSDLLSKPSLYKLLYAFEICRHNWQKAASYMYLY
SARLRMEGTLGDNQLSSSLLLERLNGLSAAINALHLVHPNFAWIEPPVERDAIQSKHYPS
KKAKRTVDEQFARDDTKPQKRNSYIDMKQLENEFVLASSEYLLSLANIKWPFTDCRLSGI
HEAPSELVDLLVQNNFYDMAFIVVIKLWRDSALKRELERVFSAMALKCCPSRLSSSGVRN
DPRISSLLLVSPNGQNDVHGSLDVLPSSQHLSGNGHWETLELYLEKYKGFNARLPIIVAE
TLLRTESQMELPLWLVLMFKDGRRAKTWGMTCEEANPASLFRLYVDYGRYTEATHLLLEC
MESFASMPPTDIINRKRPSSVCFPYNAVQNLWCKIDELIRSGHMVDACEKLRNLLHGALM
NHLKLLKVDADDVISTIA
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgacaagaacggagaacatggggcgtcgggtgccattagccggaatggagacc
tcgatcatggctaccgacgctgtagaattcattgatgtttctgttccttcttcctcatta
agagatggcgccattacttccgttgctccaccagcttgcacctcattcactgaggaccat
gcctcttgcgccgtcgtaggagatcctccaacctatctcatctggaggattcggaagatt
cgacctcatgtggtcgagctgcttcagttttcaactgccaatgaatttcgtaggattggt
cttcgaattgcctttccggaaacacttcacccagccgtgtttgtctgcactaacgagata
agttcgtctactggacatcctttcttgatgtacgccgtgacttcgtccgggatcgcttat
tgtttgaagctgcgaaatgtttcctcatacatatcctgctctgtcattcctcttgatgag
gttgtggagtttaatttgcacactcatccggacagcaaaccagtaaccagcgtctctgct
atatctggatgtctcgtgattgggagacatgatggatcagtttcatgtttcaaacttggg
tcgcttgaccaacatagccctgggtttcaacatgaactacgggatgattcaggattcaat
cgtctcttgggtttcatttcaagggtcaagttggcaggagctgtgcatgatatggtaata
tctgaggtctgtggaagacagtttctgtttgttcttcattctgacggagtcttacgagtg
tgggatctttcatgtcacagtagggtactcaatcactccatgaatattgcaactatggca
gaagcaaagtttgtgaggttgtgggtgggccaagggagcatcgatacgagtacaatgcct
ttggcaattctctataaacacccggatcatagcctggaaatgatcaacatatatcgttta
cattttagttggggagacagggtcagtctattattggagccttcaacacacaatattccc
tttaatcagggtgggtgtcttgatgtaaaacttgcatctgataagatatggatcttaaag
gacaacacactgatctttctcgacttgttcccttccgatggtcatgtgggagaagcacaa
tgttacgcattgcaagaagagtttattgcagaccagttatttcagagtgcggattattct
tctgatgcaattctttgggttacacattcaatattttcttcgacaaaggatgaggttgtg
ccattcatatcttctatattcgtacgcagactactacagcctggggtttacaatgaaatg
gctcttcgtgcgactttactggaatatagtagacactggacagattctaactttcaatct
atgacctctgatgaactgaaacaagaaattctttctctcattgaagatgagggagcaact
gcaactccagtttcaatatacctatggtggaaaaatttctgtacccactacatccatcat
tggtgcacaaacaatgctccttcattcttacttattgacaatacgtcaactgctgtgggc
ttagtcagaaggaattcggtatcactttttagatgcttggacaatgttgaacaactttta
gacggtttttctggggaacttgatgaacttggaggccctgacgttgattggattgacaat
gattcagattcagaactattgttagaggtcttgagatgtgttattagtattagcaatcgg
ttgggaaaaacaactttagctatattttatgagtcactcatgagcacacctataatccct
ttcggagaaattgttggtagaattttgaagattctagaaaatggatatggatcgtctgtg
ggaacgattaaaaggtcagatcttcatgctggctatggttgggaaagggaattgactgat
aagaaaaatcttcgaaaattttctattgaaatgatgctctctcttcatactttgtgcaac
aagggtgcctcatggggcagggttttagatgttgttgagagttttctcaaatactttgtt
ccccggaagatgtctcacaaggtacagcctcaaaggtcatcagatgtcaatacctctatt
ttggttcacgcaacctcccaaatttcaaaggttatgcttgagtcagcattagacgtcctg
ttgtttctaaattatatggtctccgtcagtgggcaggttggcttactccacgatgataca
tcaagaataaaacttgacttaattcctatgatcgaggaaattatttgtgagtggcacatt
attcatttccttgctatcacgccatctgagtcagctgcagttgaggatttcagttctcaa
ctttcacttttacaaattgataaaaatggaagtaaagaaatatggaaggggaagcttgga
aaatgtgactttacattggcttctttactgatgttaaagatgaatccttcaactgaagga
cctatctacttgtcttccaaatgtcttcttagtccacaggacattgttcttgcaacacac
aattttaccagctgggttatttgggggaacggtagagaaccttccgcctttttgaatact
tcaacagaacttgcactggttctgctaaggcatggtcaatatgatgctgttgagtacctg
ctcagtgtagtgaaggctcaatcacagaatgagaagacgtcacaatgtatgcaagatgtg
gatggtggatggtgtataatgcatcacctgcttggttgttgtcaacttgctcaagcacat
tataagttgcacggaatgatgaaagagaggaaggttcacgaagctatatgcagtttcttc
agagcttcgtctggaaacagatcttcccaggctttgcagagtttgcctcccgaagtggga
ttatcttcttttgagcttactggttgtttatctagtatcacatggaggttccattactat
cagtgggcaatgcaattgtttgagcagtataatatcagcaaaggagcttttgagtttgct
cttgctgcgcttgagttagtggaagaagctgtaagtccaaacgataattgtggtagactt
ccttccaatgaatctgccatttctatccaaggacggctttgggcaaatatcttcaagttt
tctttagatctacatcaattctatgatgcatattgtgcaatcatttcaaatccagatgag
gagagccaatatatctgcttaaggcgtttcataatcgttctttatgaatgtgatgccatt
aagattctttgttgtggtgaattaccattcattggattagcagagaaggtagagcaggag
cttgtatggaaggctgaacgttctgatctcttatcaaagccaagcttgtataagttactg
tatgcttttgaaatatgccgacataattggcaaaaagcagcaagttatatgtacctttat
tcagctcgtttgagaatggaaggaactctaggagataaccagttaagttcctcgttgctg
cttgaacgattgaatggcctttctgctgctatcaatgcgttgcatcttgttcatcctaat
tttgcgtggattgaacccccggttgaaagagatgccatccagagtaagcactacccaagt
aagaaagctaaaagaactgttgatgaacagtttgccagagatgacacgaagcctcagaag
cggaattcttatattgatatgaagcaactggaaaatgaatttgtgctagcctcatcagag
tatctcctttcattagcaaatatcaaatggccattcactgactgccgtttgtcagggatt
catgaggccccttcagagttggttgatcttctggtccagaacaatttttatgatatggca
tttattgttgttataaaattgtggagagattcagcattaaagagggagttggaaagagtt
ttctctgccatggcattgaaatgctgtcctagtagattaagttcatctggggttcggaat
gatcccagaataagtagtcttctattggtatccccaaatgggcaaaatgacgttcatggt
tcacttgatgtgcttcctagtagtcagcatctcagtggaaatggccattgggagactctg
gaactttatcttgaaaaatataaaggtttcaacgctagattgcctattattgttgctgaa
acacttcttcgaacggaatctcagatggaattgcctctttggctggttctgatgtttaag
gatggtcgaagggcaaagacatgggggatgacttgtgaagaagcaaatccagcatccttg
ttccgtttatatgttgattatgggcgatatacagaggctacacatctgttgcttgaatgc
atggaatcatttgcatcaatgccacccacagacataattaacagaaaaagaccatcctct
gtttgtttcccctacaatgccgttcagaacttatggtgcaaaatagatgaattgatccgc
tcaggtcacatggtagatgcttgtgagaagctgagaaacctactgcatggtgctttgatg
aatcatctgaagctgcttaaagtcgatgcagatgatgttatatctaccatcgcttaa
DBGET
integrated database retrieval system
