Cucurbita pepo subsp. pepo (vegetable marrow): 111808573
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Entry
111808573 CDS
T05351
Name
(RefSeq) uncharacterized protein LOC111808573
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111808573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111808573
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111808573
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111808573
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111808573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
FKBP15
Motif
Other DBs
NCBI-GeneID:
111808573
NCBI-ProteinID:
XP_023550423
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All DBs
Position
LG13:6695063..6699492
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AA seq
608 aa
AA seq
DB search
MFRPPAASSQQLPNSSLANSANGLQNPIQIQPQNQAPFCNPNAHLNNLHGNPVPNMPPPM
FQPGLMMNLQNPLMALPNNPLGASPFAPGHMGFANSAANFPAQGQFNMVPNVNQMNMNSC
LPLAQFFGQNMPNLVQQLTQNMGLSNGQFCLPFQNMNQHVIPGQMLNMSSQVPSHASYGA
PNQQAVPMPFQNPALSTIQPFGVNQAMHPVNQNPQNFIPQAMGGAGSNQLPGSAPPLQGN
STMPFNSPTQPQQARNLQSPAFVGSQGNSSISDGGNGSNSFSNNLAHRNFTRNSNKGFQK
HQAHHMKNEKKKFGVPGGPKGKGFHNERRNKFGGANSTEHVKDQKRSLSLVYTDQEILQW
REARRKNFPSSTNIQKKLTEKQSDCTVVDKEAQLLRQELKEILAKQAELGVEVAEIPQEY
LSYSEKCDDNKRHGDLSTMGEEAEGASTGKEKARNRFNKRRRPEKKNRSRKKEKPDKHLS
NKSPLKKREPTLYQKLLRADVKRDKSHMLQALRFMVMNSFFNEWPNKPLNFPSVIVKESG
SEIKVVDEKSLSTGSFNLQETNSSMVENTGSHGIASDNESDDDNSDNDEKFKGDGIPILE
EEEGEIID
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtcctccagcggcttcttcacaacagttacccaattcatctctcgcgaattcc
gccaatgggcttcaaaatcccattcaaattcaaccccaaaaccaggctcctttctgcaat
cccaacgctcacttgaacaatctccatggaaatcctgttccaaacatgccgcctcccatg
tttcaaccaggattaatgatgaatttgcaaaaccctctcatggcgttgcctaataatcca
cttggtgcttccccgtttgctcccggacatatgggatttgcaaattctgctgctaatttt
ccggctcaggggcagttcaatatggtgccgaatgtgaatcagatgaatatgaactcgtgt
ttgcctctagcgcagttttttgggcagaatatgcccaatttggttcagcaattgactcag
aatatgggattatctaatgggcagttctgtttgccgtttcaaaatatgaatcaacatgta
attcctggacagatgttgaatatgtcgtcgcaagttccttctcatgcttcatatggtgct
ccaaatcaacaagctgttccaatgccttttcagaatcctgccctctctacaattcagcct
tttggtgtcaatcaggcaatgcaccctgttaaccaaaatccccaaaacttcattccacaa
gcaatgggtggtgctggatcaaatcaattgccgggttcggctccaccgttgcaagggaac
tcgactatgccgtttaactctccgacgcaaccacaacaagccaggaacctgcagtcacct
gctttcgttggttcacaggggaattcttcaataagtgatggtggaaatggatcaaattcc
ttctcaaataatttagctcacaggaatttcacgaggaactcaaacaaaggatttcagaag
catcaagctcatcatatgaaaaatgaaaagaaaaagtttggggttcctggcggaccgaaa
ggaaaaggttttcacaatgagaggaggaacaaatttggtggtgctaactccacagaacat
gtgaaagaccagaagagatctctttctttggtctatacggatcaagaaatcctgcaatgg
cgtgaagcacgccggaagaatttcccgtcatcaaccaacatacagaagaaactcaccgaa
aagcaatccgactgcacagtggttgataaggaggctcagcttttgcgacaagaactaaaa
gagattttagcaaagcaggctgaattaggagtggaagtagcagaaataccacaagaatac
ctttcatattcagagaaatgtgacgataataaacgacacggagatctatcgacaatggga
gaggaagcagaaggagcctcaacagggaaagaaaaagctcgaaacaggttcaacaagagg
cgaagacctgagaaaaagaaccgttcgagaaagaaagaaaaacccgataagcatttatca
aacaagtcaccattaaagaagagagagccaacattataccagaagctgttgagagcagat
gttaagagagacaagagccatatgttacaagctttgagattcatggtgatgaattctttc
ttcaatgaatggcccaataaacccttgaactttccttcagtcattgtcaaagagagtgga
agtgagatcaaggtggttgatgagaagtctctatctactgggagcttcaatctccaagag
accaacagttcaatggttgaaaacactggtagtcatggcattgccagcgataacgaaagc
gacgatgacaatagcgataacgatgagaagttcaaaggagatggaataccgatactcgaa
gaggaagaaggtgaaattatcgattaa
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